Make error when compiling MET with compile_MET_all.sh

[vieirg]

Hi!

I've been trying to compile MET on my machine (I'm on Ubuntu WSL on Windows 10). I followed the steps in this link: https://metplus-training.readthedocs.io/en/latest/modules/Environment/met_installation.html, but when I run the compile_MET_all.sh script I get the error below:

MET Configuration settings...
export MET_PYTHON_CC=-I/home/vieirg/.conda/envs/metplus_base//include/python3.8
export MET_NETCDF=/home/vieirg/repos/MET-11.0.2/external_libs
export MET_GRIB2CLIB=/home/vieirg/repos/MET-11.0.2/external_libs/lib
export MET_TARBALL=/home/vieirg/repos/MET-11.0.2/tar_files/MET-11.0.2.tar.gz
export MET_HDF5=/home/vieirg/repos/MET-11.0.2/external_libs
export MET_FONT_DIR=/home/vieirg/repos/MET-11.0.2/fonts
export MET_GSL=/home/vieirg/repos/MET-11.0.2/external_libs
export MET_BUFRLIB=/home/vieirg/repos/MET-11.0.2/external_libs/lib
export MET_GRIB2CINC=/home/vieirg/repos/MET-11.0.2/external_libs/include
export MET_SUBDIR=/home/vieirg/repos/MET-11.0.2
export MET_PYTHON_LD=-L/home/vieirg/.conda/envs/metplus_base//lib/python3.8/config-3.8-x86_64-linux-gnu -L/home/vieirg/.conda/envs/metplus_base//lib -lpython3.8 -lcrypt -lpthread -ldl -lutil -lrt -lm -Xlinker -export-dynamic
export MET_PYTHON=/home/vieirg/.conda/envs/metplus_base/
LDFLAGS = -Wl,--disable-new-dtags -Wl,-rpath,/home/vieirg/repos/MET-11.0.2/external_libs/lib:/home/vieirg/repos/MET-11.0.2/external_libs/lib:/home/vieirg/repos/MET-11.0.2/external_libs/lib:/home/vieirg/repos/MET-11.0.2/external_libs/lib:/home/vieirg/.conda/envs/metplus_base//lib:/home/vieirg/repos/MET-11.0.2/external_libs/lib -Wl,-rpath,/home/vieirg/repos/MET-11.0.2/external_libs/lib:/home/vieirg/repos/MET-11.0.2/external_libs/lib -L/home/vieirg/repos/MET-11.0.2/external_libs/lib -L/home/vieirg/repos/MET-11.0.2/external_libs/lib -L/home/vieirg/repos/MET-11.0.2/external_libs/lib
cd /home/vieirg/repos/MET-11.0.2/MET-11.0.2
./configure --prefix=/home/vieirg/repos/MET-11.0.2 --bindir=/home/vieirg/repos/MET-11.0.2/bin BUFRLIB_NAME=-lbufr GRIB2CLIB_NAME=-lgrib2c --enable-grib2 --enable-python  > configure.log 2>&1
make > make.log 2>&1
make returned with non-zero (2) status

The last few lines of make.log are:

/usr/bin/gfortran  -O2 -c -o calcape.o calcape.f
calcape.f:442:72:

  442 |  510    POLD(KP)=P
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 510 at (1)
calcape.f:464:72:

  464 |  530    QSNEW(KP)=QSNEW(KP-1)+DQS
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 530 at (1)
calcape.f:472:72:

  472 |  540    PTBL(KP,KTH)=PNEW(KP)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 540 at (1)
calcape.f:485:72:

  485 |  560    THEOLD(KTH)=TH*EXP(ELIWV*QS/(CP*TOLD(KTH)))
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 560 at (1)
calcape.f:509:72:

  509 |  580    THENEW(KTH)=THENEW(KTH-1)+DTHE
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 580 at (1)
calcape.f:517:72:

  517 |  590    TTBL(KTH,KP)=TNEW(KTH)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 590 at (1)
/usr/bin/gfortran  -O2 -c -o calpbl.o calpbl.f
/usr/bin/gfortran  -O2 -c -o numpbmsg.o numpbmsg.f
/usr/bin/gfortran  -O2 -c -o openpb.o openpb.f
/usr/bin/gfortran  -O2 -c -o closepb.o closepb.f
/usr/bin/gfortran  -O2 -c -o readpb.o readpb.f
/usr/bin/gfortran  -O2 -c -o dumppb.o dumppb.f
/usr/bin/g++   -L../../../../src/basic/vx_cal -L../../../../src/basic/vx_config -L../../../../src/basic/vx_log -L../../../../src/basic/vx_math -L../../../../src/basic/vx_util -L../../../../src/basic/vx_util_math -L../../../../src/libcode/vx_afm -L../../../../src/libcode/vx_analysis_util -L../../../../src/libcode/vx_color -L../../../../src/libcode/vx_data2d -L../../../../src/libcode/vx_data2d_factory -L../../../../src/libcode/vx_data2d_grib -L../../../../src/libcode/vx_data2d_grib2 -L../../../../src/libcode/vx_data2d_nccf -L../../../../src/libcode/vx_data2d_nc_met -L../../../../src/libcode/vx_data2d_nc_pinterp -L../../../../src/libcode/vx_data2d_python -L../../../../src/libcode/vx_python3_utils -L../../../../src/libcode/vx_geodesy -L../../../../src/libcode/vx_gis -L../../../../src/libcode/vx_gnomon -L../../../../src/libcode/vx_grid -L../../../../src/libcode/vx_gsl_prob -L../../../../src/libcode/vx_nav -L../../../../src/libcode/vx_nc_obs -L../../../../src/libcode/vx_nc_util -L../../../../src/libcode/vx_pb_util -L../../../../src/libcode/vx_plot_util -L../../../../src/libcode/vx_pointdata_python -L../../../../src/libcode/vx_ps -L../../../../src/libcode/vx_pxm -L../../../../src/libcode/vx_render -L../../../../src/libcode/vx_regrid -L../../../../src/libcode/vx_bool_calc -L../../../../src/libcode/vx_shapedata -L../../../../src/libcode/vx_solar -L../../../../src/libcode/vx_statistics -L../../../../src/libcode/vx_stat_out -L../../../../src/libcode/vx_summary -L../../../../src/libcode/vx_time_series -L../../../../src/libcode/vx_series_data -L../../../../src/libcode/vx_seeps -L../../../../src/libcode/vx_tc_util -Wl,--disable-new-dtags -Wl,-rpath,/home/vieirg/repos/MET-11.0.2/external_libs/lib:/home/vieirg/repos/MET-11.0.2/external_libs/lib:/home/vieirg/repos/MET-11.0.2/external_libs/lib:/home/vieirg/repos/MET-11.0.2/external_libs/lib:/home/vieirg/.conda/envs/metplus_base//lib:/home/vieirg/repos/MET-11.0.2/external_libs/lib -Wl,-rpath,/home/vieirg/repos/MET-11.0.2/external_libs/lib:/home/vieirg/repos/MET-11.0.2/external_libs/lib -L/home/vieirg/repos/MET-11.0.2/external_libs/lib -L/home/vieirg/repos/MET-11.0.2/external_libs/lib -L/home/vieirg/repos/MET-11.0.2/external_libs/lib  -fopenmp -L/home/vieirg/repos/MET-11.0.2/external_libs/lib -L/home/vieirg/repos/MET-11.0.2/external_libs/lib -L/home/vieirg/repos/MET-11.0.2/external_libs/lib -L/home/vieirg/.conda/envs/metplus_base//lib/python3.8/config-3.8-x86_64-linux-gnu -L/home/vieirg/.conda/envs/metplus_base//lib -lpython3.8 -lcrypt -lpthread -ldl -lutil -lrt -lm -Xlinker -export-dynamic -L/home/vieirg/repos/MET-11.0.2/external_libs/lib -L/home/vieirg/repos/MET-11.0.2/external_libs/lib -o pb2nc pb2nc-pb2nc.o pb2nc-pb2nc_conf_info.o calcape.o calpbl.o numpbmsg.o openpb.o closepb.o readpb.o dumppb.o -lvx_stat_out -lvx_statistics -lvx_shapedata -lvx_gsl_prob -lvx_analysis_util -lvx_data2d_factory -lvx_data2d_nc_met -lvx_data2d_grib -lvx_data2d_grib2 -lgrib2c -ljasper -lpng -lz -lvx_data2d_nc_pinterp -lvx_data2d_nccf -lvx_data2d_python -lvx_pointdata_python -lvx_python3_utils -L/home/vieirg/.conda/envs/metplus_base//lib/python3.8/config-3.8-x86_64-linux-gnu -L/home/vieirg/.conda/envs/metplus_base//lib -lpython3.8 -lcrypt -lpthread -ldl -lutil -lrt -lm -Xlinker -export-dynamic -lvx_data2d -lvx_nc_obs -lvx_nc_util -lvx_regrid -lvx_grid -lvx_pb_util -lvx_summary -lvx_config -lvx_gsl_prob -lvx_color -lvx_util_math -lvx_util -lvx_math -lvx_cal -lvx_log -lvx_data2d_python -lvx_pointdata_python -lvx_python3_utils -L/home/vieirg/.conda/envs/metplus_base//lib/python3.8/config-3.8-x86_64-linux-gnu -L/home/vieirg/.conda/envs/metplus_base//lib -lpython3.8 -lcrypt -lpthread -ldl -lutil -lrt -lm -Xlinker -export-dynamic -lm -lnetcdf_c++4 -lnetcdf -lgsl -lgslcblas -lbufr -L/home/vieirg/repos/MET-11.0.2/external_libs/lib -L/home/vieirg/repos/MET-11.0.2/external_libs/lib -L/home/vieirg/repos/MET-11.0.2/external_libs/lib -L/home/vieirg/.conda/envs/metplus_base//lib/python3.8/config-3.8-x86_64-linux-gnu -L/home/vieirg/.conda/envs/metplus_base//lib -L/home/vieirg/repos/MET-11.0.2/external_libs/lib -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -lpython3.8 -lcrypt -lpthread -ldl -lutil -lrt -lgfortran -lm -lhdf5_hl -lhdf5 -lz -lgomp -lquadmath -lhdf5_hl -lhdf5 -lz
/usr/bin/ld: /home/vieirg/repos/MET-11.0.2/external_libs/lib/libjasper.a(jas_stream.o): in function `jas_stream_tmpfile':
/home/vieirg/repos/MET-11.0.2/external_libs/jasper/jasper-1.900.1/src/libjasper/base/jas_stream.c:368: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
/usr/bin/ld: numpbmsg.o: in function `numpbmsg_':
numpbmsg.f:(.text+0x31): undefined reference to `ufbtab_'
/usr/bin/ld: numpbmsg.o: in function `numpbmsg_new_':
numpbmsg.f:(.text+0xe0): undefined reference to `ufbtab_'
collect2: error: ld returned 1 exit status
make[5]: *** [Makefile:475: pb2nc] Error 1
make[5]: Leaving directory '/home/vieirg/repos/MET-11.0.2/MET-11.0.2/src/tools/other/pb2nc'
make[4]: *** [Makefile:395: all-recursive] Error 1
make[4]: Leaving directory '/home/vieirg/repos/MET-11.0.2/MET-11.0.2/src/tools/other'
make[3]: *** [Makefile:374: all-recursive] Error 1
make[3]: Leaving directory '/home/vieirg/repos/MET-11.0.2/MET-11.0.2/src/tools'
make[2]: *** [Makefile:371: all-recursive] Error 1
make[2]: Leaving directory '/home/vieirg/repos/MET-11.0.2/MET-11.0.2/src'
make[1]: *** [Makefile:429: all-recursive] Error 1
make[1]: Leaving directory '/home/vieirg/repos/MET-11.0.2/MET-11.0.2'
make: *** [Makefile:370: all] Error 2

Thank you!

[jprestop]

Hi @vieirg. Thank you for your question. In the configuration file that you are passing to compile_MET_all.sh, can you please tell me how you have the COMPILER variable set?

[vieirg]

Hi @jprestop, thanks for the reply! I set it to gnu, just as export COMPILER=gnu.

[vieirg]

Quick update, I changed it to gnu_12.2 and now it compiles :) Thanks!

[jprestop]

@vieirg, that's great news! I'm glad you realized changing it by adding the version number would help. I'll go ahead and mark this Discussion as Answered and then Close and Lock it to prevent future posts. Our team has decided that once discussions have been answered, and the answer has been confirmed, we’ll lock them. We want to encourage users to ask new questions in new discussions rather than posting to old ones. Hopefully that’ll make the questions/answers easier for other users to follow. So if/when more issues/questions arise, please feel free to start a new discussion.