Update develop-ref after #2462 (#2470)

Co-authored-by: johnhg <[email protected]>
Co-authored-by: Lisa Goodrich <[email protected]>
Co-authored-by: jprestop <[email protected]>
Co-authored-by: Seth Linden <[email protected]>
Co-authored-by: Howard Soh <[email protected]>
Co-authored-by: John Halley Gotway <[email protected]>
Co-authored-by: MET Tools Test Account <[email protected]>
Co-authored-by: Dave Albo <[email protected]>
Co-authored-by: j-opatz <[email protected]>
Co-authored-by: George McCabe <[email protected]>
Co-authored-by: Julie Prestopnik <[email protected]>
Co-authored-by: Jonathan Vigh <[email protected]>
Co-authored-by: lisagoodrich <[email protected]>
Co-authored-by: Seth Linden <[email protected]>
Co-authored-by: hsoh-u <[email protected]>
Co-authored-by: davidalbo <[email protected]>
Co-authored-by: Daniel Adriaansen <[email protected]>
fix 2238 link error (#2255)
fix #2271 develop nbrctc (#2272)
fix #2309 develop tcmpr (#2310)
fix #2306 ascii2nc airnow hourly (#2314)
fix_spread_md (#2335)
fix #2389 develop flowchart (#2392)
Fix Python environment issue (#2407)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406)
fix #2380 develop override (#2382)
fix #2408 develop empty config (#2410)
fix #2390 develop compile zlib (#2404)
fix #2412 develop climo (#2422)
fix #2437 develop convert (#2439)
fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix #2452 develop airnow (#2454)

data/wrappers/Makefile.am

@@ -24,8 +24,10 @@ wrappers_DATA = \
      set_python_env.py \
      read_tmp_dataplane.py \
      read_tmp_ascii.py \
+     read_tmp_point_nc.py \
      write_tmp_dataplane.py \
      write_tmp_point.py \
+     write_tmp_point_nc.py \
      write_tmp_mpr.py
 
 EXTRA_DIST = ${wrappers_DATA}

data/wrappers/Makefile.in

@@ -360,8 +360,10 @@ wrappers_DATA = \
      set_python_env.py \
      read_tmp_dataplane.py \
      read_tmp_ascii.py \
+     read_tmp_point_nc.py \
      write_tmp_dataplane.py \
      write_tmp_point.py \
+     write_tmp_point_nc.py \
      write_tmp_mpr.py
 
 EXTRA_DIST = ${wrappers_DATA}

data/wrappers/read_tmp_point_nc.py

@@ -0,0 +1,26 @@
+########################################################################
+#
+#    Reads temporary point obs. file into memory.
+#
+#    usage:  /path/to/python read_tmp_point_nc.py tmp_output_filename
+#
+########################################################################
+
+import os
+import sys
+
+# add share/met/python directory to system path to find met_point_obs
+sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__),
+                                             os.pardir, 'python')))
+from met_point_obs import met_point_obs
+from met_point_obs_nc import nc_point_obs
+
+netcdf_filename = sys.argv[1]
+
+# read NetCDF file
+print('{p}  reading{f}'.format(p=met_point_obs.get_prompt(), f=netcdf_filename))
+point_obs_data = nc_point_obs()
+point_obs_data.read_data(netcdf_filename)
+
+met_point_data = point_obs_data.get_point_data() 
+met_point_data['met_point_data'] = point_obs_data

data/wrappers/write_tmp_point_nc.py

@@ -0,0 +1,55 @@
+########################################################################
+#
+#    Adapted from a script provided by George McCabe
+#    Adapted by Howard Soh
+#
+#    usage:  /path/to/python write_tmp_point_nc.py \
+#            tmp_output_filename <user_python_script>.py <args>
+#
+########################################################################
+
+import os
+import sys
+import importlib.util
+
+# add share/met/python directory to system path to find met_point_obs
+sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__),
+                                             os.pardir, 'python')))
+
+from met_point_obs import met_point_obs
+from met_point_obs_nc import nc_point_obs
+
+PROMPT = met_point_obs.get_prompt()
+print("{p} Python Script:\t".format(p=PROMPT)  + repr(sys.argv[0]))
+print("{p} User Command:\t".format(p=PROMPT)   + repr(' '.join(sys.argv[2:])))
+print("{p} Temporary File:\t".format(p=PROMPT) + repr(sys.argv[1]))
+
+tmp_filename = sys.argv[1]
+pyembed_module_name = sys.argv[2]
+sys.argv = sys.argv[2:]
+
+# append user script dir to system path
+pyembed_dir, pyembed_file = os.path.split(pyembed_module_name)
+if pyembed_dir:
+    sys.path.insert(0, pyembed_dir)
+
+if not pyembed_module_name.endswith('.py'):
+    pyembed_module_name += '.py'
+
+user_base = os.path.basename(pyembed_module_name).replace('.py','')
+
+spec = importlib.util.spec_from_file_location(user_base, pyembed_module_name)
+met_in = importlib.util.module_from_spec(spec)
+spec.loader.exec_module(met_in)
+
+if hasattr(met_in, 'point_obs_data'):
+    met_in.point_obs_data.save_ncfile(tmp_filename)
+else:
+    if hasattr(met_in.met_point_data, 'point_obs_data'):
+        met_in.met_point_data['point_obs_data'].save_ncfile(tmp_filename)
+    else:
+        tmp_point_obs = nc_point_obs()
+        tmp_point_obs.put_data(met_in.met_point_data)
+        tmp_point_obs.save_ncfile(tmp_filename)
+
+#print('{p} writing {f}'.format(p=PROMPT, f=tmp_filename))

docs/Users_Guide/appendixF.rst

@@ -260,7 +260,7 @@ The ASCII2NC tool supports the "-format python" option. With this option, point
                 "MET_BASE/python/read_ascii_point.py sample_ascii_obs.txt" \
                 sample_ascii_obs_python.nc
 
-The Point2Grid, Plot-Point-Obs, Ensemble-Stat, and Point-Stat tools also process point observations. They support POython embedding of point observations directly on the command line by replacing the input MET NetCDF point observation file name with the Python command to be run. The Python command must begin with the prefix 'PYTHON_NUMPY=' and be followed by the path to the User's Python script and any arguments. The full command should be enclosed in single quotes to prevent embedded whitespace from causing parsing errors. An example of this is shown below:
+The Point2Grid, Plot-Point-Obs, Ensemble-Stat, and Point-Stat tools also process point observations. They support Python embedding of point observations directly on the command line by replacing the input MET NetCDF point observation file name with the Python command to be run. The Python command must begin with the prefix 'PYTHON_NUMPY=' and be followed by the path to the User's Python script and any arguments. The full command should be enclosed in single quotes to prevent embedded whitespace from causing parsing errors. An example of this is shown below:
 
 .. code-block:: none