This repository contains all the code needed to reproduce figures contained within all of my first author publications. Each publication has it's own folder; see index.csv for which folder corresponds to each publication.

Acknowledging

You are free to use, re-use, and re-mix any of the code found here for your own uses. If any of the code contributes to a publication I would appreciate it if you cited the corresponding paper that I originally wrote the code for, with a acknowledgement similar to

"This paper made use of software originally developed for Stansby et al. (year)".

Running

To run the code you will need an installation of conda. When this is done change to a specific publication directory, and an environment can be set up to run the code using the following shell commands:

conda env create -f environment.yml --name pub-env
source activate pub-env

All of the code is stored in jupyter notebooks. To run a notebook, just run

jupyter notebook

You can then select and run files individually.