Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add pip_packages param to allow repository selection when install conda env #228

Merged
merged 1 commit into from
Aug 28, 2024

Conversation

wwang-chcn
Copy link
Contributor

This PR is trying to allow repository selection when install conda environment using installGiottoEnvironment() #224

Test case:

installGiottoEnvironment(
    packages_to_install = c(
        "pandas==2.2.1",
        "networkx==2.8.8",
        "python-igraph==0.10.2",
        "leidenalg==0.9.0",
        "python-louvain==0.16",
        "python.app==1.4",
        "scikit-learn==1.1.3",
        "smfishhmrf",
        "session-info",
        ontrac
    ),
    pip_packages = c(
        "python-louvain",
        "smfishhmrf",
        "session-info",
        "ONTraC"
    ),
    python_version = python_version,
    mini_install_path = mini_install_path,
    confirm = confirm,
    envname = envname,
    conda = "auto",
    force_miniconda = force_miniconda,
    force_environment = force_environment,
    verbose = verbose
)

@jiajic jiajic merged commit 8c1c4f3 into drieslab:dev Aug 28, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants