This is a library for simulating DNA assembly methods such as Gibson
assembly. The
find_homology function returns a MatchArray representing regions
of sequence homology between any two sequences. The find_products
function takes a MatchArray and returns any possible linear or
circular products that might be formed by assembling the
sequences. Regions of sequence homology anywhere in the sequence, not
just at its ends, are taken into account. The extract_product_*
functions return the predicted sequence.
For more details see the CLI app in /examples.
The main aim of this project was to get better at Rust, it hasn't been at all well tested and probably contains serious bugs! It was largely inspired (and works similarly to) pydna.