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archlinux
archlinux
 
 
cmake/Modules
cmake/Modules
 
 
command
command
 
 
examples
examples
 
 
graphic
graphic
 
 
statistics
statistics
 
 
tests
tests
 
 
utils/genompy
utils/genompy
 
 
.gitignore
.gitignore
 
 
AlleleSpecific.hpp
AlleleSpecific.hpp
 
 
CMakeLists.txt
CMakeLists.txt
 
 
Chromosome.hpp
Chromosome.hpp
 
 
CnagSampleSet.hpp
CnagSampleSet.hpp
 
 
DchipSampleSet.hpp
DchipSampleSet.hpp
 
 
GenericSampleSet.cpp
GenericSampleSet.cpp
 
 
GenericSampleSet.hpp
GenericSampleSet.hpp
 
 
LICENSE
LICENSE
 
 
Marker.cpp
Marker.cpp
 
 
Marker.hpp
Marker.hpp
 
 
PicnicSampleSet.hpp
PicnicSampleSet.hpp
 
 
Properties.hpp
Properties.hpp
 
 
README.md
README.md
 
 
RawSampleSet.hpp
RawSampleSet.hpp
 
 
RawSampleSet_special.hpp
RawSampleSet_special.hpp
 
 
ReferenceRawSampleSet.hpp
ReferenceRawSampleSet.hpp
 
 
ReferenceSegmentedSampleSet.hpp
ReferenceSegmentedSampleSet.hpp
 
 
Sample.cpp
Sample.cpp
 
 
Sample.hpp
Sample.hpp
 
 
SampleSet.cpp
SampleSet.cpp
 
 
SampleSet.hpp
SampleSet.hpp
 
 
SampleSets.hpp
SampleSets.hpp
 
 
Segment.hpp
Segment.hpp
 
 
SegmentedSampleSet.hpp
SegmentedSampleSet.hpp
 
 
SegmentedSampleSet_special.hpp
SegmentedSampleSet_special.hpp
 
 
SplitRawSampleSet.hpp
SplitRawSampleSet.hpp
 
 
SplitRawSampleSet_special.hpp
SplitRawSampleSet_special.hpp
 
 
Tree.hpp
Tree.hpp
 
 
config.h.in
config.h.in
 
 
default.nix
default.nix
 
 
genomic.cpp
genomic.cpp
 
 
genomic.hpp
genomic.hpp
 
 
genomic.kdev4
genomic.kdev4
 
 
genomic_clean.hpp
genomic_clean.hpp
 
 
genomic_common.cpp
genomic_common.cpp
 
 
genomic_common.hpp
genomic_common.hpp
 
 
genomic_convert.hpp
genomic_convert.hpp
 
 
genomic_filter.hpp
genomic_filter.hpp
 
 
genomic_sort.hpp
genomic_sort.hpp
 
 
global.cpp
global.cpp
 
 
global.hpp
global.hpp
 
 
typedefs.h
typedefs.h
 
 

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genomic

Work in progress.

Dependencies

  • gcc (>= 4.9)
  • boost (>= 1.56)
  • OpenGL
  • SDL
  • freetype
  • ftgl
  • lua (>= 5.1)

Build

mkdir build
cmake ..
make

About

Tools for genomic copy-number analysis.

Resources

Readme

License

GPL-3.0 license
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Releases 1

v0.2 Latest
Nov 22, 2016

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