V.0.5.3 #34
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V.0.5.3 #34
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Changes include: - Fixed parseMacPathogenicity() to handle variants with multiple submitters that received both benign and pathogenic classifications, but no conflict is reported (i.e. `isPathogenic == 1 and isBenign == 1 and isConflicted == 0`) - Fixed bug reported in pull request #19: var.splitHGVSc, which doesn't consider strand information. When override = True, the ref and alt for genomic variants would be wrongly changed for minus strand transcripts. Changed to override = False - Fixed bug reported in pull request #19: fixed corrdinates in getMacClinVarTSV() to match readVCF().
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Bug fixes in parsing of ClinVar information
Changes include:
Fixed parseMacPathogenicity() to handle variants with multiple submitters that received both benign and pathogenic classifications, but no conflict is reported (i.e.
isPathogenic == 1 and isBenign == 1 and isConflicted == 0)Fixed bug reported in pull request Fix bug #19: var.splitHGVSc, which doesn't consider strand information. When override = True, the ref and alt for genomic variants would be wrongly changed for minus strand transcripts. Changed to override = False
Fixed bug reported in pull request Fix bug #19: fixed corrdinates in getMacClinVarTSV() to match readVCF().