update output to account for LineagePair triple

dib-lab · Oct 29, 2023 · a8daf3a · a8daf3a
1 parent 8791cd3
commit a8daf3a
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/charcoal/utils.py b/charcoal/utils.py
@@ -247,8 +247,9 @@ def load_contamination_summary(fp):
     for k, items in x.items():
         z = []
         for source, target, count in items:
-            source = tuple([ LineagePair(rank, name) for rank, name in source ])
-            target = tuple([ LineagePair(rank, name) for rank, name in target ])
+            # get rank, name for each
+            source = tuple([ LineagePair(x[0], x[1]) for x in source ])
+            target = tuple([ LineagePair(x[0], x[1]) for x in target ])
             z.append((source, target, count))
         contam_d[k] = z