try again #184
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name: Test | |
on: [push, pull_request] | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python: ["3.10"] | |
name: Python ${{ matrix.python }} | |
# We want to run on external PRs, but not on our own internal PRs as they'll be run by the push to the branch. | |
if: github.event_name == 'push' || github.event.pull_request.head.repo.full_name != github.repository | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: cache conda | |
uses: actions/cache@v3 | |
env: | |
CACHE_NUMBER: 0 | |
with: | |
path: ~/conda_pkgs_dir | |
key: | |
${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
- name: setup conda | |
uses: conda-incubator/setup-miniconda@3b0f2504dd76ef23b6d31f291f4913fb60ab5ff3 | |
with: | |
auto-update-conda: true | |
python-version: 3.9 | |
channels: conda-forge,bioconda | |
miniforge-variant: Mambaforge | |
miniforge-version: latest | |
use-mamba: true | |
mamba-version: "*" | |
activate-environment: sourmash_dev | |
auto-activate-base: false | |
use-only-tar-bz2: true | |
- name: Install coverage dependencies | |
run: pip install pytest-cov pytest-dependency setuptools | |
# - name: Build | |
# run: python setup.py build_ext --inplace | |
- name: Install charcoal | |
run: pip install -e . | |
- run: pytest tests | |
# - run: pytest tests --cov=. | |
# - name: Upload coverage to Codecov | |
# uses: codecov/codecov-action@v1 |