Producing DESI-Y1 Lya mocks with quickquasars. #183
Workflow file for this run
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| # Workflow is based on the Astropy GitHub actions workflow, ci_workflows.yml | |
| name: CI | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| tags: | |
| - '*' | |
| pull_request: | |
| jobs: | |
| tests: | |
| name: Unit tests | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: [3.8] # fitsio does not like Python < 3.7, astropy does not like Python < 3.8, might be too soon for 3.9. | |
| astropy-version: ['==4.0.1.post1', '==5.0'] # everest & fuji versions | |
| fitsio-version: ['==1.1.2', '==1.1.6'] # everest & fuji versions | |
| numpy-version: ['<1.23'] # to keep asscalar, used by astropy | |
| env: | |
| DESIUTIL_VERSION: 3.2.3 | |
| # DESIMODEL: ${GITHUB_WORKSPACE}/desimodel | |
| DESIMODEL_DATA: branches/test-0.18 | |
| # DESISIM: ${GITHUB_WORKSPACE}/desisim | |
| DESISIM_TESTDATA_VERSION: main | |
| # DESI_ROOT: ${DESISIM}/desi | |
| # DESI_BASIS_TEMPLATES: ${DESI_ROOT}/spectro/templates/basis_templates/v3.2 | |
| SIMQSO_VERSION: v1.2.4 | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip wheel | |
| python -m pip install pytest | |
| python -m pip install git+https://github.com/desihub/desiutil.git@${DESIUTIL_VERSION}#egg=desiutil | |
| python -m pip install -r requirements.txt | |
| python -m pip install -U 'numpy${{ matrix.numpy-version }}' | |
| python -m pip install -U 'astropy${{ matrix.astropy-version }}' | |
| # python -m pip install git+https://github.com/imcgreer/simqso.git@${SIMQSO_VERSION}#egg=simqso | |
| python -m pip install git+https://github.com/desihub/simqso.git@main#egg=simqso | |
| python -m pip cache remove fitsio | |
| python -m pip install --no-deps --force-reinstall --ignore-installed 'fitsio${{ matrix.fitsio-version }}' | |
| - name: Verify Installation | |
| run: pip list | |
| - name: Install desimodel Data | |
| run: | | |
| mkdir -p ${GITHUB_WORKSPACE}/desimodel | |
| svn export https://desi.lbl.gov/svn/code/desimodel/${DESIMODEL_DATA}/data ${GITHUB_WORKSPACE}/desimodel/data | |
| - name: Install desisim Data | |
| run: | | |
| wget https://github.com/desihub/desisim-testdata/archive/${DESISIM_TESTDATA_VERSION}.zip | |
| unzip ${DESISIM_TESTDATA_VERSION}.zip | |
| - name: Run the test | |
| run: PYTHONPATH=${GITHUB_WORKSPACE}/py DESIMODEL=${GITHUB_WORKSPACE}/desimodel DESISIM=${GITHUB_WORKSPACE} DESI_ROOT=${GITHUB_WORKSPACE}/desisim-testdata-${DESISIM_TESTDATA_VERSION}/desi DESI_BASIS_TEMPLATES=${GITHUB_WORKSPACE}/desisim-testdata-${DESISIM_TESTDATA_VERSION}/desi/spectro/templates/basis_templates/v3.2 pytest | |
| coverage: | |
| name: Test coverage | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: [3.8] | |
| fitsio-version: ['==1.1.6'] # fuji version | |
| numpy-version: ['<1.23'] # to keep asscalar, used by astropy | |
| env: | |
| DESIUTIL_VERSION: 3.2.3 | |
| # DESIMODEL: ${GITHUB_WORKSPACE}/desimodel | |
| DESIMODEL_DATA: branches/test-0.17 | |
| # DESISIM: ${GITHUB_WORKSPACE}/desisim | |
| DESISIM_TESTDATA_VERSION: main | |
| # DESI_ROOT: ${DESISIM}/desi | |
| # DESI_BASIS_TEMPLATES: ${DESI_ROOT}/spectro/templates/basis_templates/v3.2 | |
| SIMQSO_VERSION: v1.2.4 | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip wheel | |
| python -m pip install pytest pytest-cov coveralls | |
| python -m pip install git+https://github.com/desihub/desiutil.git@${DESIUTIL_VERSION}#egg=desiutil | |
| python -m pip install -r requirements.txt | |
| python -m pip install -U 'numpy${{ matrix.numpy-version }}' | |
| # python -m pip install git+https://github.com/imcgreer/simqso.git@${SIMQSO_VERSION}#egg=simqso | |
| python -m pip install git+https://github.com/desihub/simqso.git@main#egg=simqso | |
| python -m pip cache remove fitsio | |
| python -m pip install --no-deps --force-reinstall --ignore-installed 'fitsio${{ matrix.fitsio-version }}' | |
| - name: Verify Installation | |
| run: pip list | |
| - name: Install desimodel Data | |
| run: | | |
| mkdir -p ${GITHUB_WORKSPACE}/desimodel | |
| svn export https://desi.lbl.gov/svn/code/desimodel/${DESIMODEL_DATA}/data ${GITHUB_WORKSPACE}/desimodel/data | |
| - name: Install desisim Data | |
| run: | | |
| wget https://github.com/desihub/desisim-testdata/archive/${DESISIM_TESTDATA_VERSION}.zip | |
| unzip ${DESISIM_TESTDATA_VERSION}.zip | |
| - name: Run the test | |
| run: PYTHONPATH=${GITHUB_WORKSPACE}/py DESIMODEL=${GITHUB_WORKSPACE}/desimodel DESISIM=${GITHUB_WORKSPACE} DESI_ROOT=${GITHUB_WORKSPACE}/desisim-testdata-${DESISIM_TESTDATA_VERSION}/desi DESI_BASIS_TEMPLATES=${GITHUB_WORKSPACE}/desisim-testdata-${DESISIM_TESTDATA_VERSION}/desi/spectro/templates/basis_templates/v3.2 pytest --cov | |
| - name: Coveralls | |
| env: | |
| COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: coveralls | |
| docs: | |
| name: Doc test | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: [3.8] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python dependencies | |
| run: python -m pip install --upgrade pip wheel Sphinx | |
| - name: Test the documentation | |
| run: sphinx-build -W --keep-going -b html doc doc/_build/html | |
| style: | |
| name: Style check | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: [3.8] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python dependencies | |
| run: python -m pip install --upgrade pip wheel pycodestyle | |
| - name: Test the style; failures are allowed | |
| # This is equivalent to an allowed falure. | |
| continue-on-error: true | |
| run: pycodestyle --count py/desisim |