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Merging development into main #6

Merged
merged 15 commits into from
Jun 22, 2024
Merged

Merging development into main #6

merged 15 commits into from
Jun 22, 2024

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demidenm
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Made several modifications and additions:

  1. voxelwise_icc & roi_icc: updated to return six parameters. Previously MSBS and MSWS was returned in the dictionary which was not useful in comparing back to computed ICC. For each ICC formula, returning between subject variance (btwnsub), within subject variance (wthnsub) and, in case of ICC(2,1), between measure variance (btwnmeas)
  2. Added edgewise ICC estimated on correlation matrices
  3. Added TR-by-TR timeseries extract (roi mask or coordinate) and cue onset-locked TR + delay plots.

@demidenm
create masked timeseries module
c2ebc8a
@demidenm
mod timeseries object/set int
268484f
@demidenm
revised to work w/ diff trial Ns + pad beyond Vol n
a3279aa
@demidenm
fixing casting error in case of NaNs
b5de518
@demidenm
dev - update timeseries + tests
8a35438 
expand tests for masked_timeseries and refactored masked_timeseries
@demidenm
refactored test for timeseries
0f5d996 
using spm HRF from nilearn to reduce code and test range of TRs and onset intervals when extracting post cue trs for conditions. The peak should be within similar window, adjusted for index of TR
@demidenm
failed test -- git 3.8.18 local 3.8.0
fa2a3f3
@demidenm
revise to avoid env argmax error
c96e2e0
@demidenm
git workflow argmax obj test error
f6fc63a 
convertes to numeric (i.e. df["Mean_Signal"]
@demidenm
Update test_modules.py
b1688b7
@demidenm
refactored code & updated docstrings
919773b
@demidenm
removed overly broad test_modules.py
35d6b89
@demidenm
refactored + expanded docs
d3140d0
@demidenm
resize
c6ef8f0
@demidenm
refactor readthedocs
f69fe77
@demidenm demidenm merged commit 8db822c into main Jun 22, 2024
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@demidenm