temp data tests running with analysis keyword added

deepskies · May 6, 2024 · 614f6fe · 614f6fe
1 parent 5a4b137
commit 614f6fe
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Showing 4 changed files with 31 additions and 18 deletions.
diff --git a/src/scripts/DeepEnsemble.py b/src/scripts/DeepEnsemble.py
@@ -175,6 +175,12 @@ def parse_args():
         default=DefaultsDE["model"]["savefig"],
         help="option to save a figure of the true and predicted values",
     )
+    parser.add_argument(
+        "--run_analysis",
+        action="store_true",
+        default=DefaultsDE["analysis"]["run_analysis"],
+        help="option to run analysis on saved checkpoints",
+    )
     parser.add_argument(
         "--verbose",
         action="store_true",
@@ -224,6 +230,7 @@ def parse_args():
                 "randomseed": args.randomseed,
                 "batchsize": args.batchsize,
             },
+            "analysis": {"run_analysis": args.run_analysis}
             # "plots": {key: {} for key in args.plots},
             # "metrics": {key: {} for key in args.metrics},
         }
@@ -310,7 +317,7 @@ def beta_type(value):
     model, lossFn = models.model_setup_DE(
         config.get_item("model", "loss_type", "DE"), DEVICE
     )
-    '''
+
     print(
         "save final checkpoint has this value",
         config.get_item("model", "save_final_checkpoint", "DE"),
@@ -340,18 +347,19 @@ def beta_type(value):
         savefig=config.get_item("model", "savefig", "DE"),
         verbose=config.get_item("model", "verbose", "DE"),
     )
-    '''
-    # now run the analysis on the resulting checkpoints
-    chk_module = AggregateCheckpoints()
-    print('n_models', config.get_item("model", "n_models", "DE"))
-    print('n_epochs', config.get_item("model", "n_epochs", "DE"))
-    for nmodel in range(config.get_item("model", "n_models", "DE")):
-        for epoch in range(config.get_item("model", "n_epochs", "DE")):
-            chk = chk_module.load_DE_checkpoint(model,
-                            model_name,
-                            nmodel,
-                            epoch,
-                            config.get_item("model", "BETA", "DE"),
-                            DEVICE)
-            print(chk)
-            STOP
+    if config.get_item("analysis", "run_analysis", "DE"):
+        # now run the analysis on the resulting checkpoints
+        chk_module = AggregateCheckpoints()
+        print('n_models', config.get_item("model", "n_models", "DE"))
+        print('n_epochs', config.get_item("model", "n_epochs", "DE"))
+        for nmodel in range(config.get_item("model", "n_models", "DE")):
+            for epoch in range(config.get_item("model", "n_epochs", "DE")):
+                chk = chk_module.load_DE_checkpoint(
+                                model_name,
+                                nmodel,
+                                epoch,
+                                config.get_item("model", "BETA", "DE"),
+                                DEVICE)
+                # things to grab: 'valid_mse' and 'valid_bnll'
+                print(chk)
+                STOP
diff --git a/src/utils/defaults.py b/src/utils/defaults.py
@@ -39,6 +39,7 @@
         "line_style_cycle": ["-", "-."],
         "figure_size": [6, 6],
     },
+    "analysis": {"run_analysis": False},
     "plots": {"CDFRanks": {},
               "Ranks": {"num_bins": None},
               "CoverageFraction": {}},
@@ -83,6 +84,7 @@
         "savefig": False,
         "verbose": False,
     },
+    "analysis": {"run_analysis": False},
     "plots_common": {
         "axis_spines": False,
         "tight_layout": True,

diff --git a/test/test_DeepEnsemble.py b/test/test_DeepEnsemble.py
@@ -95,6 +95,9 @@ def create_test_config(
             "randomseed": 42,
             "batchsize": 100,
         },
+        "analysis": {
+            "run_analysis": False
+        }
     }
     print("theoretically dumping here", str(temp_directory) + "yamls/DE.yaml")
     yaml.dump(input_yaml, open(str(temp_directory) + "yamls/DE.yaml", "w"))
@@ -152,7 +155,7 @@ def test_DE_from_config(
             assert (
                 expected_substring in file_name
             ), f"File '{file_name}' does not contain the expected substring"
-
+    
     def test_DE_chkpt_saved(
         self, temp_directory, temp_data, noise_level="low", size_df=10
     ):

diff --git a/test/test_DeepEvidentialRegression.py b/test/test_DeepEvidentialRegression.py
@@ -94,6 +94,7 @@ def create_test_config(
             "randomseed": 42,
             "batchsize": 100,
         },
+        "analysis": {"run_analysis": False}
     }
     print("theoretically dumping here", str(temp_directory) + "yamls/DER.yaml")
     print('this is the yaml', input_yaml)
@@ -156,7 +157,6 @@ def test_DER_chkpt_saved(self,
             assert (
                 expected_substring in file_name
             ), f"File '{file_name}' does not contain the expected substring"
-
     def test_DER_from_config(self,
                              temp_directory,
                              temp_data,