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fix(pt): set weights_only=True for torch.load #4147

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merged 4 commits into from
Oct 23, 2024

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@njzjz njzjz commented Sep 19, 2024

Fix #4143.

Summary by CodeRabbit

  • New Features

    • Enhanced model loading efficiency by only loading model weights, which reduces memory usage and improves performance.
  • Bug Fixes

    • Streamlined the loading process across various components, ensuring that only essential model parameters are loaded, thus optimizing the overall functionality.
  • Tests

    • Updated tests to reflect the new loading behavior, ensuring that only model weights are loaded in various test scenarios for improved clarity and performance.

@njzjz njzjz linked an issue Sep 19, 2024 that may be closed by this pull request
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coderabbitai bot commented Sep 19, 2024

📝 Walkthrough
📝 Walkthrough

Walkthrough

The changes in this pull request involve modifying multiple files to update the torch.load function calls by adding the weights_only=True argument. This adjustment ensures that only the model weights are loaded, rather than the entire state dictionary, across various functions related to training, inference, and testing. The updates aim to streamline the loading process while maintaining existing functionality.

Changes

Files Change Summary
deepmd/pt/entrypoints/main.py, deepmd/pt/infer/deep_eval.py, deepmd/pt/infer/inference.py, deepmd/pt/train/training.py, deepmd/pt/utils/finetune.py, deepmd/pt/utils/serialization.py Updated torch.load to include weights_only=True in various functions to load only model weights.
source/tests/pt/model/test_descriptor_dpa1.py, source/tests/pt/model/test_descriptor_dpa2.py, source/tests/pt/model/test_saveload_dpa1.py, source/tests/pt/model/test_saveload_se_e2_a.py, source/tests/pt/test_change_bias.py Modified torch.load in test methods to include weights_only=True for optimized loading.

Sequence Diagram(s)

sequenceDiagram
    participant User
    participant Model
    participant Torch

    User->>Model: Request to load model
    Model->>Torch: Load model with weights_only=True
    Torch-->>Model: Return model weights
    Model-->>User: Provide loaded model
Loading

Assessment against linked issues

Objective Addressed Explanation
Address torch.load warnings by using weights_only=True (#[4143])

Possibly related PRs

Suggested reviewers

  • iProzd
  • wanghan-iapcm

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@njzjz njzjz changed the title fix: set weights_only=True for torch.load fix(pt): set weights_only=True for torch.load Sep 19, 2024
@njzjz njzjz marked this pull request as draft September 19, 2024 20:38
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njzjz commented Sep 19, 2024

WeightsUnpickler error: Unsupported class numpy.core.multiarray.scalar

Surprisingly, in some place, NumPy arrays are saved to the state dict. cc @iProzd @wanghan-iapcm

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njzjz commented Sep 19, 2024

>>> type(torch.load("model.ckpt.pt")["model"]["_extra_state"]["train_infos"]["lr"])
<class 'numpy.float64'>

github-merge-queue bot pushed a commit that referenced this pull request Sep 21, 2024
See #4147 and #4143.
We can first make `state_dict` safe for `weights_only`, then make a
breaking change when loading `state_dict` in the future.

<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit

- **New Features**
- Enhanced model saving functionality by ensuring learning rates are
consistently stored as floats, improving type consistency.
  
- **Bug Fixes**
- Updated model loading behavior in tests to focus solely on model
weights, which may resolve issues related to state dictionary loading.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
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codecov bot commented Sep 22, 2024

Codecov Report

Attention: Patch coverage is 85.71429% with 1 line in your changes missing coverage. Please review.

Project coverage is 84.55%. Comparing base (cc4b23d) to head (7bbb2e6).
Report is 5 commits behind head on devel.

Files with missing lines Patch % Lines
deepmd/pt/utils/serialization.py 0.00% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##            devel    #4147      +/-   ##
==========================================
- Coverage   84.55%   84.55%   -0.01%     
==========================================
  Files         537      537              
  Lines       51237    51238       +1     
  Branches     3047     3047              
==========================================
- Hits        43324    43323       -1     
- Misses       6965     6969       +4     
+ Partials      948      946       -2     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@njzjz njzjz added this to the v3.0.0 milestone Sep 27, 2024
@njzjz njzjz marked this pull request as ready for review October 17, 2024 19:10
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njzjz commented Oct 17, 2024

It's almost one month passed. Let's merge this PR.

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Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (3)
deepmd/pt/entrypoints/main.py (3)

286-288: Approve changes and suggest error handling

The addition of weights_only=True to torch.load is a good security practice and addresses the warnings mentioned in the PR objectives.

Consider adding error handling to catch potential exceptions that might occur if the loaded file doesn't contain the expected structure. For example:

try:
    init_state_dict = torch.load(
        init_model, map_location=DEVICE, weights_only=True
    )
    if "model" in init_state_dict:
        init_state_dict = init_state_dict["model"]
    config["model"] = init_state_dict["_extra_state"]["model_params"]
except KeyError as e:
    log.error(f"Failed to load model parameters: {e}")
    raise

385-387: Approve changes and suggest consistency improvement

The addition of weights_only=True to torch.load is consistent with the changes in the train function and addresses the security concerns mentioned in the PR objectives.

For consistency with the train function, consider adding similar error handling here:

try:
    old_state_dict = torch.load(
        input_file, map_location=env.DEVICE, weights_only=True
    )
    model_state_dict = copy.deepcopy(old_state_dict.get("model", old_state_dict))
    model_params = model_state_dict["_extra_state"]["model_params"]
except KeyError as e:
    log.error(f"Failed to load model parameters: {e}")
    raise

Line range hint 1-587: Summary of changes and their impact

The changes in this file effectively address the PR objectives by adding weights_only=True to torch.load calls in both the train and change_bias functions. This modification enhances security by preventing potential arbitrary code execution during model loading.

The changes are consistent and focused, minimizing the risk of introducing new issues. They align well with PyTorch's recommendations for secure model loading.

Consider implementing a utility function for loading models with error handling, which can be reused across different parts of the codebase. This would ensure consistent behavior and error handling when loading models. For example:

def load_model_safely(file_path, device):
    try:
        state_dict = torch.load(file_path, map_location=device, weights_only=True)
        if "model" in state_dict:
            state_dict = state_dict["model"]
        model_params = state_dict["_extra_state"]["model_params"]
        return state_dict, model_params
    except KeyError as e:
        log.error(f"Failed to load model parameters from {file_path}: {e}")
        raise

This function could then be used in both train and change_bias functions, promoting code reuse and consistency.

📜 Review details

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📥 Commits

Files that changed from the base of the PR and between 35b27cb and 7bbb2e6.

📒 Files selected for processing (3)
  • deepmd/pt/entrypoints/main.py (2 hunks)
  • deepmd/pt/infer/deep_eval.py (1 hunks)
  • deepmd/pt/train/training.py (1 hunks)
🧰 Additional context used
🔇 Additional comments (2)
deepmd/pt/infer/deep_eval.py (1)

106-108: Approved: Security improvement for torch.load

The addition of weights_only=True to the torch.load function call is a positive change that addresses the security concerns raised in the linked issue #4143. This modification aligns with PyTorch's recommendations and helps prevent potential security risks associated with loading untrusted pickle data.

To ensure this change doesn't introduce compatibility issues, please run the following verification script:

If the script returns any results, consider updating those instances as well for consistency across the codebase.

Consider adding a comment explaining the security implications of weights_only=True for future maintainers. Additionally, you may want to update the documentation to reflect this change in behavior, especially if it affects how users should prepare or load their model files.

deepmd/pt/train/training.py (1)

403-405: LGTM! Verify impact on existing functionality.

The addition of weights_only=True to the torch.load call is correct and addresses the security concern raised in the issue. This change will prevent loading arbitrary objects during unpickling.

Please verify that this change doesn't break any existing functionality that might depend on non-weight data in the checkpoint. Run the following script to check for any uses of loaded data that might be affected:

If the script returns any results, carefully review those occurrences to ensure they're not relying on non-weight data that will no longer be loaded.

@njzjz njzjz requested review from iProzd and wanghan-iapcm October 17, 2024 19:46
@iProzd iProzd added this pull request to the merge queue Oct 23, 2024
@github-merge-queue github-merge-queue bot removed this pull request from the merge queue due to failed status checks Oct 23, 2024
@njzjz njzjz added this pull request to the merge queue Oct 23, 2024
Merged via the queue into deepmodeling:devel with commit 911f41b Oct 23, 2024
60 checks passed
@njzjz njzjz deleted the weights_only branch October 23, 2024 09:11
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torch.load warnings
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