This is the basic implementation of a simple MESA simulation model for COVID-19 based in Dr Petronio Silva's model described in this article and implemented in this repository.
The model is under covid19_sir/. A Dockerfile is provided to ease the configuration of the required environment. To build the docker image:
$ ./build-image.sh
Once the image is built, start a container:
$ ./run-container.sh
Then inside the container:
$ cd covid19_sir/
$ python3 simple-simulation.py
The output is a bunch of scenario*.png and scenario*.csv files. A pair for each simulation scenario.
Scenarios can be edited/added/deleted in simple-simulation.py.
Optionally you can run the simulation from a Jupyter Notebook:
./start-notebook.sh
Then open the indicated URL in a browser on the host machine.
To run unit tests on this repository, simply cd to covid19_sir (or the desired subdirectory) and run python3 -m pytest.