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WIP: ENH: Implement command run-bidsapp #28

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WIP: ENH: Implement command run-bidsapp #28

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bpoldrack
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@bpoldrack bpoldrack commented May 5, 2018 •
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@bpoldrack bpoldrack mentioned this pull request May 5, 2018
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codecov-io commented May 5, 2018 •
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Codecov Report

Merging #28 into master will decrease coverage by 2.39%.
The diff coverage is 40.42%.

Impacted file tree graph

@@            Coverage Diff            @@
##           master      #28     +/-   ##
=========================================
- Coverage   89.08%   86.68%   -2.4%     
=========================================
  Files          19       20      +1     
  Lines         907      954     +47     
=========================================
+ Hits          808      827     +19     
- Misses         99      127     +28
Impacted Files Coverage Δ
datalad_neuroimaging/__init__.py 100% <ø> (ø) ⬆️
datalad_neuroimaging/bidsapp.py 40.42% <40.42%> (ø)

Continue to review full report at Codecov.

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mih
mih requested changes May 6, 2018
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datalad_neuroimaging/bidsapp.py
from datalad.interface.results import get_status_dict


lgr = logging.getLogger("datalad.cbbsimaging.bidsapp")
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Likely needs to change to neuroimaging.

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Indeed

datalad_neuroimaging/bidsapp.py
datalad.neuroimaging.bidsapp.NAME configuration.""",
metavar="CMD",
constraints=EnsureStr() | EnsureNone())
)
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It would be very useful to expose all the aspects of preconfiguration also as arguments, so we can support ad-hoc use.

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Agree. I also assume, while making other BIDSApps available that way, we'll discover the need for slightly different configuration.

datalad_neuroimaging/bidsapp.py
% cmd)

container_ds = Dataset(opj(dataset.path, ".git",
"environment", container_name))
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I think it is better to put it under .git/datalad/environment (or some other name, but inside a datalad namespace), otherwise we are in potential conflict with other git-based tools.

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Right.

datalad_neuroimaging/bidsapp.py
image_name = ""
else:
if not container_ds.repo.file_has_content(image_name):
container_ds.get(image_name)
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I am not sure what 70-76 do. A comment would be nice.

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Will do.

datalad_neuroimaging/bidsapp.py
% cmd)

lgr.info("Installing BIDSApp %s from %s", container_name, source)
for r in dataset.install(path=container_ds.path, source=source, result_xfm=None, return_type='generator'):
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Shouldn't the container get installed/registered in the dataset? Now it would end up under .git, but in this case the run record further down would not see it as a precondition or input, and a rerun would not be possible, right?

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Right. Forgot to do that.

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mih commented May 6, 2018

It seems to me that the step of setting up a bids app repo could be made optional and automated. The config of that repo could just as well live in the result repo, and the image could be added directly to it as well. I see the point in having a dedicated repo with many prepared images and preconfiguration, but there does seem to be a need to have this be the only scenario.

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FWIW, https://github.com/ReproNim/containers is slowly (singularity hub is "resisting" the flood) growing with BIDS apps, and other apps are to come. It also comes with a helper https://github.com/ReproNim/containers/blob/master/scripts/singularity_cmd to guarantee execution in isolation . So may be it could either come handy, replace, or inspire here.

@bpoldrack bpoldrack closed this Feb 8, 2022
mslw added a commit to mslw/datalad-neuroimaging that referenced this pull request Feb 11, 2022
@mslw
Bring up to date with template by merge and edit
40dc0ff 
Produced by git merge --allow-unrelated-histories --squash
(merging from datalad-extension-template) and resolving
conflicts.

Squashed commit of the following:

commit 0d19eeda18bb83be26564d08af6f91adc9268ad2
Merge: bfeaa45 84d672a
Author: Michael Hanke <[email protected]>
Date:   Thu Feb 10 15:29:49 2022 +0100

    Merge pull request datalad#32 from datalad/docs-explainer

    Add documentation explainer

commit bfeaa45c1f269210897b91b2cb0ff690867c60a6
Merge: 1929a22 8e9bcbc
Author: Michael Hanke <[email protected]>
Date:   Thu Feb 10 15:27:24 2022 +0100

    Merge pull request datalad#30 from datalad/mslw-patch-1

    Replace _metalad with _helloworld for easier grepping

commit 84d672accb103b1a2396181565bb2e2ab6e5d38a
Author: Stephan Heunis <[email protected]>
Date:   Thu Feb 10 15:08:57 2022 +0100

    add documentation explainer

commit 8e9bcbc4b2a64e8bcd48059ed85c5c34321f5dad
Author: Michał Szczepanik <[email protected]>
Date:   Wed Feb 9 16:23:38 2022 +0100

    Replace _metalad with _helloworld for easier grepping

commit 1929a229214945e462f40cdcee6a339dfecc7124
Merge: ec54055 7b77859
Author: Michael Hanke <[email protected]>
Date:   Mon Jan 24 10:29:45 2022 +0100

    Merge pull request datalad#29 from datalad/rf-tst

    Round of fixes and updates

commit 7b77859c361ca2ff2ae7183069160fd5b8a329ff
Author: Michael Hanke <[email protected]>
Date:   Mon Jan 24 10:12:46 2022 +0100

    Minimal codeclimate config

commit 37b060672423ec4558c131d966c595b6638787e3
Author: Michael Hanke <[email protected]>
Date:   Mon Jan 24 10:10:59 2022 +0100

    More applicable command template

    With the command being in a dedicated file.

    Now also include standard logger naming suggestions.

    Fixes datalad/datalad-extension-template#27

commit 4aa498d49a315a5864393a5373fa64bc026a713a
Author: Michael Hanke <[email protected]>
Date:   Mon Jan 24 09:52:49 2022 +0100

    Document what needs to be done for installing a git-annex snapshot

    Fixed datalad/datalad-extension-template#22

commit 7aea7b2c69d778433ffc60db22d5f9075e90fdbf
Author: Michael Hanke <[email protected]>
Date:   Mon Jan 24 09:50:18 2022 +0100

    Update codecov setup to match datalad-core

    Fixes datalad/datalad-extension-template#24

commit ec5405566fd756d281f9d1fb73e25243a3d266e4
Merge: f6ef763 a3b022c
Author: Michael Hanke <[email protected]>
Date:   Tue Jan 11 17:22:44 2022 +0100

    Merge pull request datalad#28 from datalad/bf-version

    Make version detection robust to GIT_DIR specification

commit a3b022cdf62e7637f46fc76b4e02ad2b4fb0735b
Author: Chris Markiewicz <[email protected]>
Date:   Tue Jan 11 10:37:27 2022 +0100

    Make version detection robust to GIT_DIR specification

    Analog fix to datalad/datalad#6341

commit f6ef763f94cefa953ef5dc1b037b06155a411933
Merge: b04f268 48addfb
Author: Michael Hanke <[email protected]>
Date:   Tue Jan 11 10:35:22 2022 +0100

    Merge pull request datalad#26 from datalad/no-setup-requires

    Stop using `setup_requires`

commit b04f2685fea8d9e72cb4f03801b22986e7eecf5e
Merge: cb64d9b 99a960f
Author: Yaroslav Halchenko <[email protected]>
Date:   Mon Oct 25 11:15:25 2021 -0400

    Merge pull request datalad#25 from datalad/no-distutils

    Stop using distutils

commit 48addfbabc1ab65406f76324a329449948cad8b6
Author: John T. Wodder II <[email protected]>
Date:   Mon Oct 25 09:20:18 2021 -0400

    Stop using `setup_requires`

commit 99a960ff3fa47a2b54412a8fb6c50ca48b447f06
Author: John T. Wodder II <[email protected]>
Date:   Mon Oct 25 08:49:30 2021 -0400

    Stop using distutils in _datalad_buildsupport

commit c294de886d5de7d7597d97e93ff64dd8ed2909c2
Author: John T. Wodder II <[email protected]>
Date:   Mon Oct 25 08:48:42 2021 -0400

    Keep versioneer.py from using distutils

commit cb64d9b9762d738c7d34ec3f4fd34c55cd7e184f
Merge: 8b6234b f05a10b
Author: Michael Hanke <[email protected]>
Date:   Fri Oct 1 11:01:30 2021 +0200

    Merge pull request datalad#23 from datalad/bdist-wheel

    Fix bdist_wheel command in Makefile

commit f05a10b38d90ed8e68c59a88cf8f00b2511bc4f4
Author: John T. Wodder II <[email protected]>
Date:   Thu Sep 30 09:19:39 2021 -0400

    Fix bdist_wheel command in Makefile

commit 8b6234b96aa3be6b54446a280042706585d91ca9
Merge: c4c4f52 88aeff2
Author: Michael Hanke <[email protected]>
Date:   Wed Sep 29 08:08:12 2021 +0200

    Merge pull request datalad#21 from datalad/testrequires

    Discontinue use of tests_require

commit 88aeff294ecee8b1536e5f9fcdee217c5a7ed706
Author: Michael Hanke <[email protected]>
Date:   Wed Sep 29 08:02:58 2021 +0200

    Discontinue use of tests_require

    To achieve compatibility with some of datalad's default CI setups.

commit c4c4f52bb2750c6576f441ff53b560be0a4ad675
Author: Michael Hanke <[email protected]>
Date:   Thu Apr 15 10:20:40 2021 +0200

    Disable smart quoting for valid manpages in HTML docs

commit 34aa9b7f58ecc9750d2bee8ecb3dddf9ed02ed4d
Merge: 0d4f35f edec51f
Author: Michael Hanke <[email protected]>
Date:   Wed Sep 22 14:48:33 2021 +0200

    Merge pull request datalad#19 from datalad/buildsupport

    Buildsupport update

commit edec51f420f2203328423787d04f4518f0b27ae4
Merge: 0d4f35f 9975f82
Author: Michael Hanke <[email protected]>
Date:   Wed Sep 22 14:41:40 2021 +0200

    Update DataLad build helper

commit 0d4f35f6dced6fe593e4924124df83f55e0d2590
Merge: 022720b afc8586
Author: Michael Hanke <[email protected]>
Date:   Wed Sep 22 11:04:42 2021 +0200

    Merge pull request datalad#18 from datalad/appveyor-updates

    Appveyor updates

commit afc8586101317359de04375815cfe87aede30bab
Author: Michael Hanke <[email protected]>
Date:   Wed Sep 22 10:57:41 2021 +0200

    Do apt-get update before apt-get install

    Analog change to an update necessary in -ukbiobank that makes sense in
    general.

    Fixes datalad/datalad-extension-template#13

commit 2b59d6a4a773fd330f01864e9e3cf6eb9417e3b1
Author: Michael Hanke <[email protected]>
Date:   Wed Sep 22 10:55:37 2021 +0200

    Bump git-annex version for testing to a recent release

    Matching the one used in datalad-core

commit 022720b6aee5f95fc8c9b57916fffe9c9d3b4563
Merge: 64d185d 3cbd005
Author: Michael Hanke <[email protected]>
Date:   Wed Sep 22 10:49:42 2021 +0200

    Merge pull request datalad#14 from datalad/fix-manifest

    Add missing/necessary files to sdists

commit 64d185dd7bebfbf8b513a0b90a3b30b7b4530ef2
Merge: e90593e 448eb72
Author: Michael Hanke <[email protected]>
Date:   Wed Sep 22 10:44:32 2021 +0200

    Merge pull request datalad#16 from datalad/mv-entry-points

    Move entry points declaration to setup.cfg

commit e90593e86017f2860526c3d9348c2235a6373857
Merge: ec853dc a6e5add
Author: Michael Hanke <[email protected]>
Date:   Wed Sep 22 10:41:27 2021 +0200

    Merge pull request datalad#15 from datalad/no-universal

    Remove `--universal` flag

commit ec853dcba03878202e2c2fe4da4c68383275675d
Merge: 0098853 200030b
Author: Michael Hanke <[email protected]>
Date:   Wed Sep 22 10:38:30 2021 +0200

    Merge pull request datalad#17 from datalad/versioneer

    Versioneer needs more history to do its job

commit 200030bfea4e0488edd6efc00324a2e05d3db869
Author: Michael Hanke <[email protected]>
Date:   Wed Sep 22 10:33:54 2021 +0200

    Versioneer needs more history to do its job

commit 448eb72efb482831ce17a1a5421bb1b0863a46c4
Author: John T. Wodder II <[email protected]>
Date:   Wed Sep 15 12:50:54 2021 -0400

    Move entry points declaration to setup.cfg

commit a6e5add3f3cdb3192a9c9dde910f9d67a7eebb11
Author: John T. Wodder II <[email protected]>
Date:   Wed Sep 15 12:47:19 2021 -0400

    Remove `--universal` flag

commit 3cbd00592f20d2554da34ec0a4765c55a9184233
Author: John T. Wodder II <[email protected]>
Date:   Wed Sep 15 12:37:40 2021 -0400

    Add necessary files to sdists

commit 9975f82bd5b43cc6bd6e0d36fc18ae9382bb40ab
Author: Michael Hanke <[email protected]>
Date:   Thu Apr 15 08:15:27 2021 +0200

    BF: We only have lower-case command names

    In a command suite that only defines the class name of a command,
    and no explicit cmdline name, no manpage would be built, because
    the test against the parser content would look like

      `Ls != ls`

    This change enforces lower-case for autogenerated command names.

commit 0098853fee84d0ed6794a291b5056445403a6cd2
Merge: 7078c9d 4d2c049
Author: Michael Hanke <[email protected]>
Date:   Sat Apr 10 12:29:35 2021 +0200

    Merge pull request datalad#12 from datalad/rf-36

    Update workflow to minimal supported Python version (3.6)

commit 4d2c04930c184455a30a1592827a55c979c6a49b
Author: Michael Hanke <[email protected]>
Date:   Sat Apr 10 12:23:25 2021 +0200

    Update workflow to minimal supported Python version (3.6)

commit 7078c9d738102d6e5df6cc59b09b159425e610bf
Author: Michael Hanke <[email protected]>
Date:   Tue Mar 23 07:29:08 2021 +0100

    Use Debian snapshots as a stable place for packages

commit 4827d994939d220194a99b53eb5ed83d0b3e18da
Merge: 4ad6769 899e9ba
Author: Michael Hanke <[email protected]>
Date:   Thu Mar 11 17:13:11 2021 +0100

    Merge pull request datalad#11 from datalad/tst-coverage

    Working coverage submission across all platforms

commit 899e9bae0f39ea479a18a9415c0b978d2d2a6e89
Author: Michael Hanke <[email protected]>
Date:   Thu Mar 11 16:51:09 2021 +0100

    Working coverage submission across all platforms

commit 4ad67696dde62b01213a7cfb2964cc5a1a104507
Merge: 616ea72 1260e41
Author: Michael Hanke <[email protected]>
Date:   Thu Mar 11 09:08:29 2021 +0100

    Merge pull request datalad#10 from datalad/typos

    Minor fixup of wording for command_suite

commit 1260e4175d60a1bd9fad85ed04833b79632d3ac8
Author: Yaroslav Halchenko <[email protected]>
Date:   Tue Mar 2 18:30:12 2021 -0500

    Minor fixup of wording for command_suite

commit 616ea72d35b04e6ea920ef2abfbd5ca76b0f1592
Merge: a4a5749 7d8c9aa
Author: Michael Hanke <[email protected]>
Date:   Tue Mar 2 08:20:57 2021 +0100

    Merge pull request datalad#9 from datalad/installer

    Use released version of datalad-installer

commit 7d8c9aa9f796df763bb83485174d35ef4a2ebcc7
Author: Michael Hanke <[email protected]>
Date:   Tue Mar 2 07:40:52 2021 +0100

    Use released version of datalad-installer

    - get rid of custom git-annex installer script on windows,
      use the official implementation instead
    - add support for requesting a specific installer version
      via ENV variable DATALAD_INSTALLER_VERSION, go with "latest"
      by default. Requesting an unavailable installer version will
      make the build error.

commit a4a574989b1dfc78a4ac0287374e9780208add7d
Author: Michael Hanke <[email protected]>
Date:   Mon Jan 25 08:12:45 2021 +0100

    TST: Switch default test setup to appveyor

    Following changes in datalad-core as well as other extensions.

commit f304d45b8d1f34dae08d0809c8e87c5047f8e278
Author: Michael Hanke <[email protected]>
Date:   Tue Jun 16 13:46:11 2020 +0200

    Fix for consistency

commit 1fb2ed6756596ff8e0410dd07314a132f81f1357
Author: Michael Hanke <[email protected]>
Date:   Mon Jun 15 17:42:00 2020 +0200

    Prevent inclusion of build helpers into binary packages

commit ce8e7f002b0aedfd1c0b77403c16ca511b56eeaf
Merge: 0924ab1 cd61512
Author: Michael Hanke <[email protected]>
Date:   Mon Jun 15 13:08:29 2020 +0200

    Add DataLad build helper

commit cd615129ab5efd800a9c4dcbf752651b6b921740
Author: Michael Hanke <[email protected]>
Date:   Mon Jun 15 13:08:29 2020 +0200

    Squashed '_datalad_buildsupport/' content from commit 023a1b7

    git-subtree-dir: _datalad_buildsupport
    git-subtree-split: 023a1b77194508f7aa1d7ec5ec3bb222c1d840aa

commit 0924ab1e62b31e647eb6268e28c17edd6c26a77f
Author: Michael Hanke <[email protected]>
Date:   Mon Jun 15 13:07:44 2020 +0200

    Minor name change

    Avoids conflict with code in datalad-core and matches source repo name.

commit 80bf1979d5c8f9f1770deec687dc8106867c91f9
Author: Michael Hanke <[email protected]>
Date:   Mon Jun 15 09:01:18 2020 +0200

    Rename file to get a more obvious label

commit 1cfca1d17b7b72f01c67e29affa4168c3baba8c8
Author: Michael Hanke <[email protected]>
Date:   Mon Jun 15 09:00:06 2020 +0200

    Extend README with practical info

commit 49817c694686d21ceb5aacb22c43fa5e320d9945
Merge: a20b711 73a7485
Author: Michael Hanke <[email protected]>
Date:   Mon Jun 15 08:57:28 2020 +0200

    Merge pull request datalad#7 from datalad/readme

    Community related pointers for the README

commit 73a74858b21ca7ba32b4abd32330b97ae3cd84a4
Author: Adina Wagner <[email protected]>
Date:   Wed Jun 10 13:28:40 2020 +0200

    add a minimal zenodo.json file

commit 28b0f3084e7ba0565e6a720653bcfcc89c58abf4
Author: Adina Wagner <[email protected]>
Date:   Wed Jun 10 13:29:27 2020 +0200

    add archival and community related pointers to the README

commit a20b71151336982730894b1a534d67831f68c94c
Merge: ea1ed84 12a5a2d
Author: Michael Hanke <[email protected]>
Date:   Mon Jun 15 08:42:44 2020 +0200

    Merge pull request datalad#6 from datalad/build_helpers

    Build and render manpages -- using common build helpers

commit 12a5a2de5ae27ef658c4099a988d6b1fd47ebd1b
Author: Michael Hanke <[email protected]>
Date:   Mon Jun 15 08:25:24 2020 +0200

    Remove leftover broken devel requirement

commit dbd12d14cf4e1f4231b84d02d1f555ea02b242dc
Merge: da5b936 023a1b7
Author: Michael Hanke <[email protected]>
Date:   Mon Jun 15 08:19:45 2020 +0200

    Add DataLad build helper

    git-subtree-dir: _datalad_build_support
    git-subtree-mainline: da5b936048453af66ff9d821920df70eedc87d24
    git-subtree-split: 023a1b77194508f7aa1d7ec5ec3bb222c1d840aa

commit da5b936048453af66ff9d821920df70eedc87d24
Author: Michael Hanke <[email protected]>
Date:   Fri Jun 12 17:32:04 2020 +0200

    Add makefile target for updating the DataLad build helpers

commit 023a1b77194508f7aa1d7ec5ec3bb222c1d840aa
Author: Michael Hanke <[email protected]>
Date:   Mon Jun 15 08:16:13 2020 +0200

    BF: Read package metadata directly from setup.cfg

    The distribution object does not seem to see it (at least not
    under all circumstances).

commit fd99b4eece55f97514387b31787d15b393a669f9
Author: Michael Hanke <[email protected]>
Date:   Mon Jun 15 08:15:09 2020 +0200

    RF: Remove helpers that are not needed for extensions

    DataLad core can add its own ones again, but it is not worth imposing
    the code on all extensions.

commit ba575108283843f6e9f63c1852c69cc29df08ffd
Author: Michael Hanke <[email protected]>
Date:   Fri Jun 12 17:35:46 2020 +0200

    Enable building manpages for extensions

    With the ability to point to a specific command suite.

    The rest is just about making datalad core not break.

commit 343b9a0ba4f72c4da641f6ba74dfbe643b70807a
Author: Michael Hanke <[email protected]>
Date:   Fri Jun 12 17:21:01 2020 +0200

    Start with a copy from datalad/datalad-neuroimaging@afa6825

commit 5d64f44cb21adf62b26feaf216f9767ca4b1928a
Author: Michael Hanke <[email protected]>
Date:   Thu Jun 11 12:41:43 2020 +0200

    Build and render manpages

commit ea1ed84757f7f3bbbd172073676883179f770c7e
Merge: a836e6b 1a56499
Author: Michael Hanke <[email protected]>
Date:   Wed Jun 10 16:24:09 2020 +0200

    Merge pull request datalad#5 from mih/master

    Modernization

commit 1a56499f2ccc9d96bb9936d1a2d8edf3a87a4125
Author: Michael Hanke <[email protected]>
Date:   Wed Jun 10 12:17:29 2020 +0200

    Make more datalad-friendly by prevent annex creation on datalad-save

commit 915818a1b5988efffc4b6c8f25b1ccc6bdd8f6e1
Author: Michael Hanke <[email protected]>
Date:   Wed Jun 10 12:15:06 2020 +0200

    Remove needless setup complication

commit 90debfceae21cd4d43521230dd59f7a9586442b7
Author: Michael Hanke <[email protected]>
Date:   Wed Jun 10 12:14:50 2020 +0200

    Fix badge name

commit ec78dfdf1b3f89bb9f21fff2fa5fd26fe37505b6
Author: Michael Hanke <[email protected]>
Date:   Wed Jun 10 11:30:11 2020 +0200

    Added top-level Makefile with release-to-pypi helper

commit e8d69fb3cf21eadc344c15bc22bf1ad9fe0ee3d7
Author: Michael Hanke <[email protected]>
Date:   Wed Jun 10 09:33:58 2020 +0200

    Update README with more status badges

commit c34760b8a562053005556fa835dffc200f1ae430
Author: Michael Hanke <[email protected]>
Date:   Wed Jun 10 10:57:46 2020 +0200

    Github action to build the docs

commit 24199ea7d06f8aafcda006aeec1edd3721bdec36
Author: Michael Hanke <[email protected]>
Date:   Wed Jun 10 10:34:50 2020 +0200

    Sphinx-doc scaffold

commit 514d3430bf2e6fdab7e6378105e807372cc46646
Author: Michael Hanke <[email protected]>
Date:   Wed Jun 10 10:30:52 2020 +0200

    Add workflow for testing on windows

commit 61163c77291dc16f6c877c2bf757e1827cb8a1ad
Author: Michael Hanke <[email protected]>
Date:   Wed Jun 10 08:20:01 2020 +0200

    Standardize on requirement-devel.txt

commit cc7ed24953a06aec135bdf94d4a5b49915dccdfb
Author: Michael Hanke <[email protected]>
Date:   Wed Jun 10 07:59:48 2020 +0200

    Add github workflow for testing on a crippled filesystem

commit f2b2a6c2ac938671aa5fb8c7be99a8811cde3102
Author: Michael Hanke <[email protected]>
Date:   Wed Jun 10 07:56:23 2020 +0200

    Ignore pip metadata dumps and other stuff

commit 8e0ace0a0b48d7fb5e2dba3ca8242dc85a5af4ac
Author: Michael Hanke <[email protected]>
Date:   Wed Jun 10 07:48:54 2020 +0200

    [DATALAD RUNCMD] Install/enable versioneer

    === Do not change lines below ===
    {
     "chain": [],
     "cmd": "versioneer install",
     "exit": 0,
     "extra_inputs": [],
     "inputs": [],
     "outputs": [],
     "pwd": "."
    }
    ^^^ Do not change lines above ^^^

commit f44d7e2c0b83801a53c5238d966a54ab50fabfc0
Author: Michael Hanke <[email protected]>
Date:   Wed Jun 10 09:34:46 2020 +0200

    Add missing __init__.py to get tests installed correctly

commit d94fb13aa4f037d50945eb69c7565d8d92cf68e4
Author: Michael Hanke <[email protected]>
Date:   Wed Jun 10 07:46:56 2020 +0200

    Simplify Travis setup

    No PY2, more up-to-date PY3 versions

commit edfe14a6f4ddeb75801864647400185cd48b8b3f
Author: Michael Hanke <[email protected]>
Date:   Wed Jun 10 07:41:07 2020 +0200

    Fixup and expand metadata in setup.cfg and for setup.py

    Sensible default setup for dependencies and testing. Should enable
    to just drop in some code, rename the package and run.

commit d0eec9f9c59915dbe48acec863329d1b112aaa23
Author: Adina Wagner <[email protected]>
Date:   Tue Jun 9 10:52:48 2020 +0200

    add initial configuration for versioneer setup

commit 63e9a481c87e3301528ce6d5f4d65f91cb3bd4b0
Author: Adina Wagner <[email protected]>
Date:   Tue Jun 9 10:46:34 2020 +0200

    modernize setup according to https://github.com/datalad/datalad-ukbiobank

commit a836e6ba83b8f17cfc321e0c878157cc96ae7847
Author: Michael Hanke <[email protected]>
Date:   Wed Jun 10 08:05:04 2020 +0200

    Dummy workflow

commit 78de6c37f4443ca1218a3f75abfa6caee300e686
Author: Michael Hanke <[email protected]>
Date:   Fri Oct 12 07:55:25 2018 +0200

    TST: Swap out directmode tests for v6 tests

commit 75b6fa4b523267b509e4cd20f6db75c43ef53e1c
Author: Michael Hanke <[email protected]>
Date:   Fri Oct 12 06:52:49 2018 +0200

    Standard gitignore

commit 2bc890edefba106124c678bac6df521783d3b397
Author: Michael Hanke <[email protected]>
Date:   Fri Oct 12 06:52:29 2018 +0200

    Improve standard setup

commit 8da041aaf1c1c20205f788b87d02d675115adebb
Author: Michael Hanke <[email protected]>
Date:   Fri Apr 6 11:20:12 2018 +0200

    RF: Extension naming conventions
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@bpoldrack @codecov-io @mih @yarikoptic