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spiekos authored Nov 30, 2023
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## About the Dataset

[The Diseases at Jensen Lab](https://diseases.jensenlab.org/About) is a "weekly updated web resource that integrates evidence on disease-gene associations from automatic text mining, manually curated literature, cancer mutation data, and genome-wide association studies." The data has evidence with confidence scores that facilitate comparison of the different types and sources of evidence.
[The DISEASES at Jensen Lab](https://diseases.jensenlab.org/About) is a "weekly updated web resource that integrates evidence on disease-gene associations from automatic text mining, manually curated literature, cancer mutation data, and genome-wide association studies." The data has evidence with confidence scores that facilitate comparison of the different types and sources of evidence.

### Download Data

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#### Scripts

##### Bash Script

[`run.sh`](run.sh) downloads the experimental, manually curated, and text mining data from DISEASES at Jensen Lab and converts it into csv files formatted for import into the Data Commons knowledge graph.

##### Python Script

[`format_disease_jensen_lab.py`](format_disease_jensen_lab.py) parses the raw .tsv files with Diseases at Jensen Lab into well formatted .csv files with generated dcids.
[`format_disease_jensen_lab.py`](format_disease_jensen_lab.py) parses the raw .tsv files with DISEASES at Jensen Lab into well formatted csv files with generated dcids.

#### Files

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