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Update README.md
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Fix hierarchical ontology for classes used in import
spiekos authored Oct 29, 2024

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20 changes: 10 additions & 10 deletions scripts/biomedical/PharmGKB/README.md
Original file line number Diff line number Diff line change
@@ -68,23 +68,23 @@ In this import we will process the following files:

##### Classes
* ChemicalCompoundChemicalCompoundAssociation
* Thing -> BioChemEntity -> BiomedicalEntity -> MedicalEntity -> Substance -> ChemicalSubstance -> ChemicalCompound -> ChemicalCompoundChemicalCompoundAssociation
* Thing -> BiomedicalEntity -> MedicalEntity -> Substance -> ChemicalSubstance -> ChemicalCompound -> ChemicalCompoundChemicalCompoundAssociation
* ChemicalCompoundGeneticVariantAssociation
* Thing -> BioChemEntity -> BiomedicalEntity -> MedicalEntity -> Substance -> ChemicalSubstance -> ChemicalCompound -> ChemicalCompoundGeneticVariantAssociation
* Thing -> BioChemEntity -> BiomedicalEntity -> BiologicalEntity -> GenomeAnnotation -> GeneticAssociation -> ChemicalCompoundGeneticVariantAssociation
* Thing -> BiomedicalEntity -> MedicalEntity -> Substance -> ChemicalSubstance -> ChemicalCompound -> ChemicalCompoundGeneticVariantAssociation
* Thing -> BiomedicalEntity -> BiologicalEntity -> GenomeAnnotation -> GeneticAssociation -> ChemicalCompoundGeneticVariantAssociation
* DiseaseDiseaseAssociation
* Thing -> BioChemEntity -> BiomedicalEntity -> Disease -> DiseaseAssociation -> DiseaseDiseaseAssociation
* Thing -> BiomedicalEntity -> Disease -> DiseaseAssociation -> DiseaseDiseaseAssociation
* DiseaseGeneticVariantAssociation
* Thing -> BioChemEntity -> BiomedicalEntity -> Disease -> DiseaseAssociation -> DiseaseGeneticVariantAssociation
* Thing -> BioChemEntity -> BiomedicalEntity -> BiologicalEntity -> GenomeAnnotation -> GeneticAssociation > DiseaseGeneticVariantAssociation
* Thing -> BiomedicalEntity -> Disease -> DiseaseAssociation -> DiseaseGeneticVariantAssociation
* Thing -> BiomedicalEntity -> BiologicalEntity -> GenomeAnnotation -> GeneticAssociation > DiseaseGeneticVariantAssociation
* GeneGeneAssociation
* Thing -> BioChemEntity -> BiomedicalEntity -> BiologicalEntity -> GenomeAnnotation -> GeneticAssociation -> GeneGeneAssociation
* Thing -> BiomedicalEntity -> BiologicalEntity -> GenomeAnnotation -> GeneticAssociation -> GeneGeneAssociation
* GeneGeneticVariantAssociation
* Thing > BioChemEntity > BiomedicalEntity > BiologicalEntity > GenomeAnnotation -> GeneticAssociation -> GeneGeneticVariantAssociation
* Thing -> BiomedicalEntity -> BiologicalEntity -> GenomeAnnotation -> GeneticAssociation -> GeneGeneticVariantAssociation
* GeneticVariantGeneticVariantAssociation
* Thing -> BioChemEntity -> BiomedicalEntity -> BiologicalEntity -> GenomeAnnotation -> GeneticAssociation -> GeneticVariantGeneticVariantAssociation
* Thing -> BiomedicalEntity -> BiologicalEntity -> GenomeAnnotation -> GeneticAssociation -> GeneticVariantGeneticVariantAssociation
* GenomicCoordinates
* Thing -> BioChemEntity -> BiomedicalEntity -> BiologicalEntity -> GenomeAnnotation -> GenomicCoordinates
* Thing -> BiomedicalEntity -> BiologicalEntity -> GenomeAnnotation -> GenomicCoordinates

##### Properties
* BiomedicalEntity

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