Prepare v2019-08-06 release

data2health · Aug 7, 2019 · 1882895 · 1882895
1 parent 88a4655
commit 1882895
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Showing 7 changed files with 2,105 additions and 677 deletions.
diff --git a/cro.obo b/cro.obo
diff --git a/cro.owl b/cro.owl
diff --git a/imports/bfo_import.owl b/imports/bfo_import.owl
@@ -108,7 +108,19 @@
 
     <!-- http://purl.obolibrary.org/obo/IAO_0000232 -->
 
-    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000232"/>
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000232">
+        <rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+        <rdfs:label xml:lang="en">curator note</rdfs:label>
+    </owl:AnnotationProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/IAO_0000412 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
+        <rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+        <rdfs:label xml:lang="en">imported from</rdfs:label>
+    </owl:AnnotationProperty>
 
 
 

diff --git a/imports/credit_import.owl b/imports/credit_import.owl
diff --git a/imports/iao_import.owl b/imports/iao_import.owl
@@ -181,7 +181,42 @@ We also have the outstanding issue of how to aim different definitions to differ
 
     <!-- http://purl.obolibrary.org/obo/IAO_0000232 -->
 
-    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000232"/>
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000232">
+        <obo:IAO_0000111 xml:lang="en">curator note</obo:IAO_0000111>
+        <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+        <obo:IAO_0000115 xml:lang="en">An administrative note of use for a curator but of no use for a user</obo:IAO_0000115>
+        <obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
+        <rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+        <rdfs:label xml:lang="en">curator note</rdfs:label>
+    </owl:AnnotationProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/IAO_0000234 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000234">
+        <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+        <obo:IAO_0000115>The name of the person, project, or organization that motivated inclusion of an ontology term by requesting its addition.</obo:IAO_0000115>
+        <obo:IAO_0000117>Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg</obo:IAO_0000117>
+        <obo:IAO_0000119>Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg</obo:IAO_0000119>
+        <rdfs:comment>The &apos;term requester&apos; can credit the person, organization or project who request the ontology term.</rdfs:comment>
+        <rdfs:label xml:lang="en">ontology term requester</rdfs:label>
+    </owl:AnnotationProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/IAO_0000412 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
+        <obo:IAO_0000111 xml:lang="en">imported from</obo:IAO_0000111>
+        <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+        <obo:IAO_0000115 xml:lang="en">For external terms/classes, the ontology from which the term was imported</obo:IAO_0000115>
+        <obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
+        <obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
+        <obo:IAO_0000119 xml:lang="en">GROUP:OBI:&lt;http://purl.obolibrary.org/obo/obi&gt;</obo:IAO_0000119>
+        <rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+        <rdfs:label xml:lang="en">imported from</rdfs:label>
+    </owl:AnnotationProperty>
 
 
 
@@ -237,6 +272,20 @@ We also have the outstanding issue of how to aim different definitions to differ
 
 
 
+    <!-- http://purl.obolibrary.org/obo/IAO_0100001 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001">
+        <obo:IAO_0000111 xml:lang="en">term replaced by</obo:IAO_0000111>
+        <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+        <obo:IAO_0000115 xml:lang="en">Add as annotation triples in the granting ontology</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">Use on obsolete terms, relating the term to another term that can be used as a substitute</obo:IAO_0000115>
+        <obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
+        <obo:IAO_0000119 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000119>
+        <rdfs:label xml:lang="en">term replaced by</rdfs:label>
+    </owl:AnnotationProperty>
+
+
+
     <!-- http://purl.obolibrary.org/obo/RO_0001900 -->
 
     <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001900">

diff --git a/src/ontology/catalog-v001.xml b/src/ontology/catalog-v001.xml
@@ -1,12 +1,12 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
 <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
     <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
-        <uri id="Automatically generated entry, Timestamp=1564706906118" name="http://purl.obolibrary.org/obo/bfo.owl" uri="mirror/bfo.owl"/>
-        <uri id="Automatically generated entry, Timestamp=1564706906118" name="duplicate:http://purl.obolibrary.org/obo/cro.owl" uri="cro.owl"/>
-        <uri id="Automatically generated entry, Timestamp=1564706906118" name="duplicate:http://purl.obolibrary.org/obo/cro.owl" uri="ed_definitions_merged.owl"/>
-        <uri id="Automatically generated entry, Timestamp=1564706906118" name="http://purl.obolibrary.org/obo/cro/imports/bfo_import.owl" uri="imports/bfo_import.owl"/>
-        <uri id="Automatically generated entry, Timestamp=1564706906118" name="http://purl.obolibrary.org/obo/cro/imports/iao_import.owl" uri="imports/iao_import.owl"/>
-        <uri id="Automatically generated entry, Timestamp=1564706906118" name="http://purl.obolibrary.org/obo/iao.owl" uri="mirror/iao.owl"/>
-        <uri id="Automatically generated entry, Timestamp=1564706906118" name="http://purl.org/credit/ontology" uri="imports/credit_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1565137664051" name="http://purl.obolibrary.org/obo/bfo.owl" uri="mirror/bfo.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1565137664051" name="duplicate:http://purl.obolibrary.org/obo/cro.owl" uri="cro.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1565137664051" name="duplicate:http://purl.obolibrary.org/obo/cro.owl" uri="ed_definitions_merged.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1565137664051" name="http://purl.obolibrary.org/obo/cro/imports/bfo_import.owl" uri="imports/bfo_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1565137664051" name="http://purl.obolibrary.org/obo/cro/imports/iao_import.owl" uri="imports/iao_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1565137664051" name="http://purl.obolibrary.org/obo/iao.owl" uri="mirror/iao.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1565137664051" name="http://purl.org/credit/ontology" uri="imports/credit_import.owl"/>
     </group>
 </catalog>