update readme #2
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| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: duckdb-test | |
| jobs: | |
| R-CMD-check: | |
| if: github.repository == 'darwin-eu/CDMConnector' || github.repository == 'darwin-eu-dev/CDMConnector' | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - name: Install suggested packages | |
| run: | | |
| install.packages("DatabaseConnector") | |
| install.packages("RPostgres") | |
| install.packages("testthat") | |
| shell: Rscript {0} | |
| - name: Install CirceR | |
| run: | | |
| install.packages("rJava") | |
| install.packages("RJSONIO") | |
| install.packages("CirceR", repos = "https://OHDSI.github.io/drat", type = "source") | |
| install.packages("Capr", repos = "https://OHDSI.github.io/drat", type = "source") | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| dependencies: '"hard"' | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - name: Run tests on duckdb | |
| run: | | |
| withr::with_envvar(new = c("CI_TEST_DB" = "duckdb"), testthat::test_local()) | |
| shell: Rscript {0} | |