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Working with peptides/proteins #13

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StLeonidas opened this issue Oct 26, 2022 · 0 comments
Open

Working with peptides/proteins #13

StLeonidas opened this issue Oct 26, 2022 · 0 comments

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@StLeonidas
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I have successfully tested YAMDA searching motifs in the test DNA dataset. Then I tried to run YAMDA with aminoacidic data (like an example in attached logo figure) with obvious motif. I have tried to lower thresholds and soften cut-off with run_em.py options but no luck.
What is obstructing the detection of motifs in the protein dataset? Could you recommend a way or options set allowing to get motifs in such cases?

sample_FASTA_PT
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@StLeonidas