TEST splitting docker build from other jobs

.github/workflows/build-docker.yml

@@ -1,6 +1,6 @@
 name: Build Docker
 
-# Controls when the action will run. 
+# Controls when the action will run.
 # Triggers the workflow for a pull request for
 # dev when the Dockerfile file changes.
 on:
@@ -17,7 +17,7 @@ jobs:
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@v1
       - name: Login to DockerHub
-        uses: docker/login-action@v1 
+        uses: docker/login-action@v1
         with:
           registry: pgc-images.sbgenomics.com
           username: ${{ secrets.DOCKER_HUB_USERNAME }}
@@ -27,5 +27,14 @@ jobs:
         uses: docker/build-push-action@v2
         with:
           push: false
+          context: .
+          file: ./Dockerfile
+          tags: myimage:latest
+          outputs: type=docker,dest=/tmp/myimage.tar
       - name: Image digest
         run: echo ${{ steps.docker_build.outputs.digest }}
+      - name: Upload artifact
+        uses: actions/upload-artifact@v2
+        with:
+          name: myimage
+          path: /tmp/myimage.tar

.github/workflows/run-analysis.yml

@@ -4,28 +4,42 @@ name: Run Analysis
 on:
   workflow_dispatch:
   pull_request:
+        branches: [ dev ]
 
 jobs:
-  build_and_run:
+  build_and_download_data:
     runs-on: ubuntu-18.04
     steps:
       - uses: actions/checkout@v3
         name: Checkout repo
 
+# Build docker container and download testing data
       - name: Build container and download data
         uses: ./
         id: download-data
         with:
-          args: OPENPBTA_URL=https://s3.amazonaws.com/d3b-openaccess-us-east-1-prd-pbta/data OPENPBTA_RELEASE=testing bash download-data.sh
+          args: OPENPEDCAN_URL=https://s3.amazonaws.com/d3b-openaccess-us-east-1-prd-pbta/open-targets OPENPEDCAN_RELEASE=testing bash download-data.sh
 
-      - name: Run 01-create-interaction-plots in container
-        uses: ./
-        id: create-interaction-plots
-        with:
-          args: OPENPBTA_ALL=0 bash analyses/interaction-plots/01-create-interaction-plots.sh
+  run_analysis:
+    runs-on: ubuntu-18.04
+    needs: build_and_download_data
+    steps:
 
-      - name: Run RUN-telomerase-activity-prediction in container
-        uses: ./
-        id: RUN-telomerase-activity-prediction
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v1
+
+      - name: Download artifact
+        uses: actions/download-artifact@v2
         with:
-          args: bash analyses/telomerase-activity-prediction/RUN-telomerase-activity-prediction.sh
+          name: myimage
+          path: /tmp
+
+      - name: Load Docker image
+        run: |
+          docker load --input /tmp/myimage.tar
+          docker image ls -a
+
+      - name: Run Molecular Subtyping - MB
+        id: RUN-molecular-subtyping-MB
+        run: |
+            OPENPBTA_SUBSET=0 bash analyses/molecular-subtyping-MB/run-molecular-subtyping-mb.sh

scripts/run-analysis.sh

@@ -1,3 +1,3 @@
-#!/bin/sh
+#!/bin/bash
 
-sh -c "$*"
+bash -c "$*"