create separate yaml scripts for mem-intensive jobs #1
Workflow file for this run
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| name: Analysis - TP53 | |
| on: | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| run_analysis: | |
| name: Run Analysis - TP53 | |
| runs-on: large-runner-32 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - name: TP53/NF1 scores | |
| entrypoint: tp53_nf1_score/run_classifier.sh | |
| openpedcan_polya_strand: 0 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download Data | |
| uses: docker://pgc-images.sbgenomics.com/d3b-bixu/open-pedcan:latest | |
| with: | |
| entrypoint: ./download-data.sh | |
| env: | |
| OPENPEDCAN_URL: https://s3.amazonaws.com/d3b-openaccess-us-east-1-prd-pbta/open-targets | |
| OPENPEDCAN_RELEASE: testing | |
| - name: Run Analysis | |
| uses: docker://pgc-images.sbgenomics.com/d3b-bixu/open-pedcan:latest | |
| with: | |
| entrypoint: analyses/${{ matrix.entrypoint }} | |
| env: | |
| OPENPBTA_SUBSET: ${{ matrix.openpbta_subset }} | |
| OPENPBTA_TESTING: ${{ matrix.openpbta_testing }} | |
| RUN_FOR_SUBTYPING: ${{ matrix.run_for_subtyping }} | |
| OPENPEDCAN_POLYA_STRAND: ${{ matrix.openpedcan_polya_strand }} |