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pass in model name and task id to run auto annotation script
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@benhoff
benhoff committed Dec 22, 2019
1 parent 01dd071 commit 6d77193
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88 changes: 52 additions & 36 deletions utils/auto_annotation/README.md
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Expand Up @@ -4,49 +4,65 @@ A small command line program to test and run AutoAnnotation Scripts.

## Instructions

Change in to the root of the project directory and run
There are two modes to run this script in. If you already have a model uploaded into the server, and you're having
issues with running it in production, you can pass in the model name and a task id that you want to test against.

```shell
$ python cvat/utils/auto_annotation/run_model.py --py /path/to/python/interp.py \
--xml /path/to/xml/file.xml \
--bin /path/to/bin/file.bin \
--json /path/to/json/mapping/mapping.json
# Note that this module can be found in cvat/utils/auto_annotation/run_model.py
$ python /path/to/run_model.py --model-name mymodel --task-id 4
```

If you're running in docker, this can be useful way to debug your model.

``` shell
$ docker exec -it cvat bash -ic 'python3 ~/cvat/apps/auto_annotation/run_model.py --model-name my-model --task-id 4
```
If you are developing an auto annotation model or you can't get something uploaded into the server,
then you'll need to specify the individual inputs.
```shell
# Note that this module can be found in cvat/utils/auto_annotation/run_model.py
$ python path/to/run_model.py --py /path/to/python/interp.py \
--xml /path/to/xml/file.xml \
--bin /path/to/bin/file.bin \
--json /path/to/json/mapping/mapping.json
```
Some programs need to run unrestricted or as an administer. Use the `--unrestriced` flag to simulate.
You can pass image files in to fully simulate your findings. Images are passed in as a list
```shell
$ python cvat/utils/auto_annotation/run_model.py --py /path/to/python/interp.py \
--xml /path/to/xml/file.xml \
--bin /path/to/bin/file.bin \
--json /path/to/json/mapping/mapping.json \
--image-files /path/to/img.jpg /path2/to/img2.png /path/to/img3.jpg
$ python /path/to/run_model.py --py /path/to/python/interp.py \
--xml /path/to/xml/file.xml \
--bin /path/to/bin/file.bin \
--json /path/to/json/mapping/mapping.json \
--image-files /path/to/img.jpg /path2/to/img2.png /path/to/img3.jpg
```
Additionally, it's sometimes useful to visualize your images.
Use the `--show-images` flag to have each image with the annotations pop up.

```shell
$ python cvat/utils/auto_annotation/run_model.py --py /path/to/python/interp.py \
--xml /path/to/xml/file.xml \
--bin /path/to/bin/file.bin \
--json /path/to/json/mapping/mapping.json \
--image-files /path/to/img.jpg /path2/to/img2.png /path/to/img3.jpg \
--show-images
$ python /path/to/run_model.py --py /path/to/python/interp.py \
--xml /path/to/xml/file.xml \
--bin /path/to/bin/file.bin \
--json /path/to/json/mapping/mapping.json \
--image-files /path/to/img.jpg /path2/to/img2.png /path/to/img3.jpg \
--show-images
```

If you'd like to see the labels printed on the image, use the `--show-labels` flag
```shell
$ python cvat/utils/auto_annotation/run_model.py --py /path/to/python/interp.py \
--xml /path/to/xml/file.xml \
--bin /path/to/bin/file.bin \
--json /path/to/json/mapping/mapping.json \
--image-files /path/to/img.jpg /path2/to/img2.png /path/to/img3.jpg \
--show-images \
--show-labels
$ python /path/to/run_model.py --py /path/to/python/interp.py \
--xml /path/to/xml/file.xml \
--bin /path/to/bin/file.bin \
--json /path/to/json/mapping/mapping.json \
--image-files /path/to/img.jpg /path2/to/img2.png /path/to/img3.jpg \
--show-images \
--show-labels
```
There's a command that let's you scan quickly by setting the length of time (in milliseconds) to display each image.
Expand All @@ -55,13 +71,13 @@ In this example, 2000 milliseconds is 2 seconds for each image.
```shell
# Display each image in a window for 2 seconds
$ python cvat/utils/auto_annotation/run_model.py --py /path/to/python/interp.py \
--xml /path/to/xml/file.xml \
--bin /path/to/bin/file.bin \
--json /path/to/json/mapping/mapping.json \
--image-files /path/to/img.jpg /path2/to/img2.png /path/to/img3.jpg \
--show-images \
--show-image-delay 2000
$ python /path/to/run_model.py --py /path/to/python/interp.py \
--xml /path/to/xml/file.xml \
--bin /path/to/bin/file.bin \
--json /path/to/json/mapping/mapping.json \
--image-files /path/to/img.jpg /path2/to/img2.png /path/to/img3.jpg \
--show-images \
--show-image-delay 2000
```
Visualization isn't always enough.
Expand All @@ -70,10 +86,10 @@ You must install the necessary packages installed, but then you can add the `--s
results will serialize correctly.

```shell
$ python cvat/utils/auto_annotation/run_model.py --py /path/to/python/interp.py \
--xml /path/to/xml/file.xml \
--bin /path/to/bin/file.bin \
--json /path/to/json/mapping/mapping.json \
--image-files /path/to/img.jpg /path2/to/img2.png /path/to/img3.jpg \
--serialize
$ python /path/to/run_model.py --py /path/to/python/interp.py \
--xml /path/to/xml/file.xml \
--bin /path/to/bin/file.bin \
--json /path/to/json/mapping/mapping.json \
--image-files /path/to/img.jpg /path2/to/img2.png /path/to/img3.jpg \
--serialize
```
87 changes: 78 additions & 9 deletions utils/auto_annotation/run_model.py
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Expand Up @@ -4,6 +4,8 @@
import argparse
import random
import logging
import fnmatch
from operator import xor

import numpy as np
import cv2
Expand All @@ -18,10 +20,14 @@

def _get_kwargs():
parser = argparse.ArgumentParser()
parser.add_argument('--py', required=True, help='Path to the python interpt file')
parser.add_argument('--xml', required=True, help='Path to the xml file')
parser.add_argument('--bin', required=True, help='Path to the bin file')
parser.add_argument('--json', required=True, help='Path to the JSON mapping file')
parser.add_argument('--py', help='Path to the python interpt file')
parser.add_argument('--xml', help='Path to the xml file')
parser.add_argument('--bin', help='Path to the bin file')
parser.add_argument('--json', help='Path to the JSON mapping file')

parser.add_argument('--model-name', help='Name of the model in the Model Manager')
parser.add_argument('--task-id', type=int, help='ID task used to test the model')

parser.add_argument('--restricted', dest='restricted', action='store_true')
parser.add_argument('--unrestricted', dest='restricted', action='store_false')
parser.add_argument('--image-files', nargs='*', help='Paths to image files you want to test')
Expand Down Expand Up @@ -56,14 +62,75 @@ def find_min_y(array):

return array[index]

def _get_docker_files(model_name: str, task_id: int):
os.environ['DJANGO_SETTINGS_MODULE'] = 'cvat.settings.development'

import django
django.setup()

from cvat.apps.auto_annotation.models import AnnotationModel
from cvat.apps.engine.models import Task as TaskModel

task = TaskModel(pk=task_id)
model = AnnotationModel.objects.get(name=model_name)

images_dir = task.get_data_dirname()

py_file = model.interpretation_file.name
mapping_file = model.labelmap_file.name
xml_file = model.model_file.name
bin_file = model.weights_file.name

image_files = []
for root, _, filenames in os.walk(images_dir):
for filename in fnmatch.filter(filenames, '*.jpg'):
image_files.append(os.path.join(root, filename))

return py_file, mapping_file, bin_file, xml_file, image_files


def main():
kwargs = _get_kwargs()

py_file = kwargs['py']
bin_file = kwargs['bin']
mapping_file = kwargs['json']
xml_file = kwargs['xml']
py_file = kwargs.get('py')
bin_file = kwargs.get('bin')
mapping_file = kwargs.get('json')
xml_file = kwargs.get('xml')

model_name = kwargs.get('model_name')
task_id = kwargs.get('task_id')

is_docker = model_name and task_id

# xor is `exclusive or`. English is: if one or the other but not both
if xor(bool(model_name), bool(task_id)):
logging.critical('Must provide both `--model-name` and `--task-id` together!')
return

if is_docker:
files = _get_docker_files(model_name, task_id)
py_file = files[0]
mapping_file = files[1]
bin_file = files[2]
xml_file = files[3]
image_files = files[4]
else:
return_ = False
if not py_file:
logging.critical('Must provide --py file!')
return_ = True
if not bin_file:
logging.critical('Must provide --bin file!')
return_ = True
if not xml_file:
logging.critical('Must provide --xml file!')
return_ = True
if not mapping_file:
logging.critical('Must provide --json file!')
return_ = True

if return_:
return

if not os.path.isfile(py_file):
logging.critical('Py file not found! Check the path')
Expand Down Expand Up @@ -98,7 +165,9 @@ def main():
mapping = {int(k): v for k, v in mapping.items()}

restricted = kwargs['restricted']
image_files = kwargs.get('image_files')

if not is_docker:
image_files = kwargs.get('image_files')

if image_files:
image_data = [cv2.imread(f) for f in image_files]
Expand Down

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