Add code and gadma_params that were used to generate test data using …

…msprime
ctlab · Nov 6, 2024 · e5ca77b · e5ca77b
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diff --git a/tests/test_data/DATA/vcf_ld/gadma_params_to_generate_preproc_data_model1 b/tests/test_data/DATA/vcf_ld/gadma_params_to_generate_preproc_data_model1
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+Output directory: remove
+Input data: fake_data.vcf,fake_data_pop_map.txt
+Engine: momentsLD
+Sequence length: {'1': 200000, '2': 200000, '3': 200000, '4': 200000, '5': 200000, '6': 200000, '7': 200000, '8': 200000, '9': 200000, '10': 200000, '11': 200000, '12': 200000, '13': 200000, '14': 200000, '15': 200000, '16': 200000, '17': 200000, '18': 200000, '19': 200000, '20': 200000}
+Mutation rate: 1.25e-8
+Recombination rate: 1.5e-8
+Region len: 50000
+Number of processes: 4
+
+preprocessed_data: ./preprocessed_data.bp
diff --git a/tests/test_data/DATA/vcf_ld/gadma_params_to_generate_preproc_data_model2 b/tests/test_data/DATA/vcf_ld/gadma_params_to_generate_preproc_data_model2
@@ -0,0 +1,10 @@
+Output directory: remove
+Input data: fake_data.vcf,fake_data_pop_map.txt
+Engine: momentsLD
+Sequence length: {'1': 200000, '2': 200000, '3': 200000, '4': 200000, '5': 200000, '6': 200000, '7': 200000, '8': 200000, '9': 200000, '10': 200000, '11': 200000, '12': 200000, '13': 200000, '14': 200000, '15': 200000, '16': 200000, '17': 200000, '18': 200000, '19': 200000, '20': 200000}
+Mutation rate: 1.25e-8
+Recombination maps: rec_maps_code_generation
+Region len: 50000
+Number of processes: 4
+
+preprocessed_data: ./preprocessed_data.bp
diff --git a/tests/test_data/DATA/vcf_ld/gadma_params_to_generate_preproc_data_model3 b/tests/test_data/DATA/vcf_ld/gadma_params_to_generate_preproc_data_model3
@@ -0,0 +1,10 @@
+Output directory: remove
+Input data: fake_data.vcf,fake_data_pop_map.txt
+Engine: momentsLD
+Sequence length: {'1': 200000, '2': 200000, '3': 200000, '4': 200000, '5': 200000, '6': 200000, '7': 200000, '8': 200000, '9': 200000, '10': 200000, '11': 200000, '12': 200000, '13': 200000, '14': 200000, '15': 200000, '16': 200000, '17': 200000, '18': 200000, '19': 200000, '20': 200000}
+Mutation rate: 1.25e-8
+Recombination maps: rec_maps_code_generation
+Region len: 50000
+Number of processes: 4
+
+preprocessed_data: ./preprocessed_data.bp