update the version string

ctSkennerton · Sep 3, 2019 · 1db340f · 1db340f
1 parent 7a545b2
commit 1db340f
Show file tree

Hide file tree

Showing 3 changed files with 8 additions and 7 deletions.
diff --git a/.gitignore b/.gitignore
@@ -1,2 +1,3 @@
 *.class
 *.jar
+t/*output
diff --git a/minced.java b/minced.java
@@ -2,7 +2,7 @@
 
 public class minced
 {
-   public static final String VERSION = "0.4.0";
+   public static final String VERSION = "0.4.2";
 	public static void main(String[] args)
    {
       //default values

diff --git a/t/Aquifex_aeolicus_VF5.expected b/t/Aquifex_aeolicus_VF5.expected
@@ -1,7 +1,7 @@
 ##gff-version 3
-gi|15282445|ref|NC_000918.1|	minced:0.4.0	repeat_region	156460	156767	5	.	.	ID=CRISPR1;rpt_type=direct;rpt_family=CRISPR;rpt_unit_seq=GTTCCTAATGTACCGTGTGGAGTTGAAACC
-gi|15282445|ref|NC_000918.1|	minced:0.4.0	repeat_region	244561	244791	4	.	.	ID=CRISPR2;rpt_type=direct;rpt_family=CRISPR;rpt_unit_seq=GTTTCAACTCCACACGGTACATTAGGAAC
-gi|15282445|ref|NC_000918.1|	minced:0.4.0	repeat_region	279264	279555	5	.	.	ID=CRISPR3;rpt_type=direct;rpt_family=CRISPR;rpt_unit_seq=GTTTTAACTCCACACGGTACATTAGAAAC
-gi|15282445|ref|NC_000918.1|	minced:0.4.0	repeat_region	1226626	1226861	4	.	.	ID=CRISPR4;rpt_type=direct;rpt_family=CRISPR;rpt_unit_seq=CGTTTCTAATGTACCGTAGAGGAGTTGAAAC
-gi|15282445|ref|NC_000918.1|	minced:0.4.0	repeat_region	1379598	1379894	5	.	.	ID=CRISPR5;rpt_type=direct;rpt_family=CRISPR;rpt_unit_seq=GTTTCAACTCCACTACGGTACATTAGGAAC
-gi|15282445|ref|NC_000918.1|	minced:0.4.0	repeat_region	1418900	1419060	3	.	.	ID=CRISPR6;rpt_type=direct;rpt_family=CRISPR;rpt_unit_seq=GTTCCTAATGTACCGTGTGGAGTTGAAAC
+gi|15282445|ref|NC_000918.1|	minced:0.4.2	repeat_region	156460	156767	5	.	.	ID=CRISPR1;rpt_type=direct;rpt_family=CRISPR;rpt_unit_seq=GTTCCTAATGTACCGTGTGGAGTTGAAACC
+gi|15282445|ref|NC_000918.1|	minced:0.4.2	repeat_region	244561	244791	4	.	.	ID=CRISPR2;rpt_type=direct;rpt_family=CRISPR;rpt_unit_seq=GTTTCAACTCCACACGGTACATTAGGAAC
+gi|15282445|ref|NC_000918.1|	minced:0.4.2	repeat_region	279264	279555	5	.	.	ID=CRISPR3;rpt_type=direct;rpt_family=CRISPR;rpt_unit_seq=GTTTTAACTCCACACGGTACATTAGAAAC
+gi|15282445|ref|NC_000918.1|	minced:0.4.2	repeat_region	1226626	1226861	4	.	.	ID=CRISPR4;rpt_type=direct;rpt_family=CRISPR;rpt_unit_seq=CGTTTCTAATGTACCGTAGAGGAGTTGAAAC
+gi|15282445|ref|NC_000918.1|	minced:0.4.2	repeat_region	1379598	1379894	5	.	.	ID=CRISPR5;rpt_type=direct;rpt_family=CRISPR;rpt_unit_seq=GTTTCAACTCCACTACGGTACATTAGGAAC
+gi|15282445|ref|NC_000918.1|	minced:0.4.2	repeat_region	1418900	1419060	3	.	.	ID=CRISPR6;rpt_type=direct;rpt_family=CRISPR;rpt_unit_seq=GTTCCTAATGTACCGTGTGGAGTTGAAAC