Update pipeline.yml

cribbslab · Oct 15, 2023 · 49823be · 49823be
1 parent c15e01e
commit 49823be
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/tallytrin/pipeline_singlecell_macosko/pipeline.yml b/tallytrin/pipeline_singlecell_macosko/pipeline.yml
@@ -39,7 +39,7 @@ strip-seq: 1
 
 # minimap2 mapping options
 minimap2:
-   options: -ax splice:hq -uf
+   options: map-ont -p 0.9 --end-bonus 10 -N 3
 
    fasta_cdna: Homo_sapiens.GRCh38.cdna.all.fa