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Release v1.3.0 [2020/06/17]

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@cpockrandt cpockrandt released this 17 Jun 01:20
· 5 commits to master since this release
genmap-v1.3.0
c9a8291

Features

  • Faster and more efficient index creation (libdivsufsort), requires about 6n main memory (for fasta files >2GB about 10n main memory). n is the size of the input fasta files. No additional secondary memory is needed (unlike for Skew)
  • slightly smaller indices (about 0.625n - 0.75n less space). Old indices are still compatible with GenMap 1.3.0, but indices built with 1.3.0 are not compatible with older versions of GenMap.

Fixes

  • indexing will search for fasta files recursively (subfolders were not considered before)
  • updated paper information (replaced bioRxiv with OUP Bioinformatics)
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