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add_3_autoref_from_main_and_10_from_lineage_proposals #2499

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Mar 5, 2024
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add_3_autoref_from_main_and_10_from_lineage_proposals #2499

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46a79f3
add_3_autoref_from_main_and_10_from_lineage_proposals
xz-keg Feb 25, 2024
996d25a
Merge branch 'master' into master
AngieHinrichs Mar 5, 2024
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77 changes: 20 additions & 57 deletions automated-issue-ref.ipynb
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Expand Up @@ -144,7 +144,11 @@
"processed 1300 milestones\n",
"processed 1310 milestones\n",
"processed 1320 milestones\n",
"processed 1330 milestones\n"
"processed 1330 milestones\n",
"processed 1340 milestones\n",
"processed 1350 milestones\n",
"processed 1360 milestones\n",
"processed 1370 milestones\n"
]
}
],
Expand Down Expand Up @@ -309,60 +313,19 @@
"name": "stdout",
"output_type": "stream",
"text": [
"['KG.1', 'sars-cov-2-variants/lineage-proposals#951']\n",
"['DV.7.1.8', 'sars-cov-2-variants/lineage-proposals#860']\n",
"['JN.1.1.2', 'sars-cov-2-variants/lineage-proposals#1147']\n",
"['JN.1.1.3', 'sars-cov-2-variants/lineage-proposals#1089']\n",
"['JN.1.6.1', 'sars-cov-2-variants/lineage-proposals#1089']\n",
"['JN.1.7', 'sars-cov-2-variants/lineage-proposals#1097']\n",
"['JN.1.8.1', 'sars-cov-2-variants/lineage-proposals#1097']\n",
"['JN.1.9', '#2410']\n",
"['JN.1.10', 'sars-cov-2-variants/lineage-proposals#1135']\n",
"['JN.2.2', '#2433']\n",
"['JN.2.5', 'sars-cov-2-variants/lineage-proposals#1173']\n",
"['JN.1.2.1', 'sars-cov-2-variants/lineage-proposals#1322']\n",
"['JN.1.4.1', 'sars-cov-2-variants/lineage-proposals#1175']\n",
"['JN.1.9.1', 'sars-cov-2-variants/lineage-proposals#1097']\n",
"['JN.1.11.1', 'sars-cov-2-variants/lineage-proposals#1253']\n",
"['KP.1', 'sars-cov-2-variants/lineage-proposals#1364']\n",
"['JN.1.12', 'sars-cov-2-variants/lineage-proposals#1253']\n",
"['JN.1.13', '#2464']\n",
"['JN.1.16', 'sars-cov-2-variants/lineage-proposals#1253']\n",
"['JN.1.18', 'sars-cov-2-variants/lineage-proposals#1089']\n",
"['JN.1.21', 'sars-cov-2-variants/lineage-proposals#1162']\n",
"['JN.12', 'sars-cov-2-variants/lineage-proposals#1102']\n",
"['JH.2', '#2068']\n",
"['GK.1.8', 'sars-cov-2-variants/lineage-proposals#643']\n",
"['GK.1.8.1', 'sars-cov-2-variants/lineage-proposals#1127']\n",
"['GK.1.11', 'sars-cov-2-variants/lineage-proposals#643']\n",
"['GK.3.1', 'sars-cov-2-variants/lineage-proposals#643']\n",
"['KK.1', 'sars-cov-2-variants/lineage-proposals#1210']\n",
"['KK.2', 'sars-cov-2-variants/lineage-proposals#1277']\n",
"['XBB.1.5.108', 'sars-cov-2-variants/lineage-proposals#550']\n",
"['XBB.1.5.109', '#2262']\n",
"['HN.4.1', 'sars-cov-2-variants/lineage-proposals#1054']\n",
"['HN.4.1.1', 'sars-cov-2-variants/lineage-proposals#1054']\n",
"['HN.4.2', 'sars-cov-2-variants/lineage-proposals#971']\n",
"['FL.1.8', 'sars-cov-2-variants/lineage-proposals#1058']\n",
"['FL.2.7', 'sars-cov-2-variants/lineage-proposals#552']\n",
"['FL.2.7.1', 'sars-cov-2-variants/lineage-proposals#552']\n",
"['FL.10', 'sars-cov-2-variants/lineage-proposals#28']\n",
"['FL.24.1', 'sars-cov-2-variants/lineage-proposals#789']\n",
"['FL.38', 'sars-cov-2-variants/lineage-proposals#1001']\n",
"['HK.3.14', 'sars-cov-2-variants/lineage-proposals#978']\n",
"['JG.3.4', 'sars-cov-2-variants/lineage-proposals#1081']\n",
"['KL.1', 'sars-cov-2-variants/lineage-proposals#1174']\n",
"['HV.1.8', '#2432']\n",
"['HV.1.9', 'sars-cov-2-variants/lineage-proposals#957']\n",
"['HV.1.10', 'sars-cov-2-variants/lineage-proposals#1044']\n",
"['HV.2', 'sars-cov-2-variants/lineage-proposals#537']\n",
"['EG.7', 'sars-cov-2-variants/lineage-proposals#56']\n",
"['FP.2', 'sars-cov-2-variants/lineage-proposals#31']\n",
"['JF.1.1.1', 'sars-cov-2-variants/lineage-proposals#643']\n",
"['JF.3', 'sars-cov-2-variants/lineage-proposals#976']\n",
"['XBB.1.16.28', 'sars-cov-2-variants/lineage-proposals#1000']\n",
"['XBB.1.16.29', 'sars-cov-2-variants/lineage-proposals#524']\n",
"['XBB.1.16.30', 'sars-cov-2-variants/lineage-proposals#554']\n",
"['FY.1.2.1', 'sars-cov-2-variants/lineage-proposals#863']\n",
"['FW.1.1.1', 'sars-cov-2-variants/lineage-proposals#1242']\n",
"['GE.1.2.1', 'sars-cov-2-variants/lineage-proposals#1103']\n",
"['XBB.2.3.21', 'sars-cov-2-variants/lineage-proposals#281']\n",
"['XBC.1.7', 'sars-cov-2-variants/lineage-proposals#110']\n",
"['XBL.3.1', 'sars-cov-2-variants/lineage-proposals#44']\n",
"['XDA.1', 'sars-cov-2-variants/lineage-proposals#1031']\n",
"['XDD.1', 'sars-cov-2-variants/lineage-proposals#1203']\n",
"['XDD.1.1', 'sars-cov-2-variants/lineage-proposals#1203']\n",
"['XDD.2', 'sars-cov-2-variants/lineage-proposals#1176']\n",
"['XDH', 'sars-cov-2-variants/lineage-proposals#128']\n"
"['GN.1.4', '#2349']\n"
]
}
],
Expand Down Expand Up @@ -419,17 +382,17 @@
},
{
"cell_type": "code",
"execution_count": 6,
"execution_count": 5,
"id": "1c9369e1",
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Add 2 references from cov-lineages/pango-designation.\n",
"Add 3 references from cov-lineages/pango-designation.\n",
"Upgrade 0 references from cov-lineages/pango-designation.\n",
"Add 78 references from sars-cov-2-variants/lineage-proposals.\n"
"Add 10 references from sars-cov-2-variants/lineage-proposals.\n"
]
}
],
Expand Down
53 changes: 46 additions & 7 deletions autoref/milestone.txt
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Expand Up @@ -902,6 +902,20 @@
832 JN.2.2 JN.2.2
833 JN.1.9 JN.1.9
834 JN.1.11 JN.1.11
835 XDN XDN
836 XDP XDP
837 JN.3.2 JN.3.2+JN.3.2.1
837 JN.3.2.1 JN.3.2+JN.3.2.1
838 GN.1.4 GN.1.4
839 JN.1.4.2 JN.1.4.2
840 XDT XDT
841 HK.13.2.1 HK.13.2.1
842 GK.10.1 GK.10.1+KN.1+KN.1.1
842 KN.1 GK.10.1+KN.1+KN.1.1
842 KN.1.1 GK.10.1+KN.1+KN.1.1
843 JN.1.1.4 JN.1.1.4
844 JN.1.13 JN.1.13
845 JN.1.23 JN.1.23
sars#1 XCE XCE
sars#2 XCF XCF
sars#4 CM.7.1 CM.7.1+CM.7.1.1
Expand Down Expand Up @@ -1140,7 +1154,10 @@ sars#225 XBB.1.16.26 XBB.1.16.26
sars#226 XDD XDD
sars#227 JG.3.3 JG.3.3
sars#228 JG.3.2 JG.3.2
sars#229 GK.1.10 GK.1.10
sars#229 GK.1.10 GK.1.10+GK.1.10.1+KN.1+KN.1.1
sars#229 GK.1.10.1 GK.1.10+GK.1.10.1+KN.1+KN.1.1
sars#229 KN.1 GK.1.10+GK.1.10.1+KN.1+KN.1.1
sars#229 KN.1.1 GK.1.10+GK.1.10.1+KN.1+KN.1.1
sars#230 JN.7 JN.7
sars#231 HR.1.1 HR.1.1
sars#233 BA.2.86.4 BA.2.86.4
Expand Down Expand Up @@ -1309,7 +1326,6 @@ sars#377 FL.2.7.1 FL.2.7+FL.2.7.1
sars#378 JN.1.1 JN.1.1+JN.1.4
sars#378 JN.1.4 JN.1.1+JN.1.4
sars#379 XDL XDL
sars#380 HV.1.10 HV.1.10
sars#381 JN.1.5 JN.1.5
sars#382 JN.1.1.2 JN.1.1.2
sars#383 JN.2.5 JN.2.5
Expand All @@ -1318,11 +1334,14 @@ sars#385 XDD.1 XDD.1+XDD.1.1
sars#385 XDD.1.1 XDD.1+XDD.1.1
sars#386 XDD.2 XDD.2
sars#387 JN.1.9 JN.1.9
sars#389 JN.1.1.1 JN.1.1.1+JN.1.8.1+JN.1.7
sars#389 JN.1.8.1 JN.1.1.1+JN.1.8.1+JN.1.7
sars#389 JN.1.7 JN.1.1.1+JN.1.8.1+JN.1.7
sars#390 JN.1.1.3 JN.1.1.3+JN.1.6.1
sars#390 JN.1.6.1 JN.1.1.3+JN.1.6.1
sars#389 JN.1.1.1 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3
sars#389 JN.1.8.1 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3
sars#389 JN.1.7 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3
sars#389 JN.1.9.1 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3
sars#389 JN.1.4.3 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3
sars#390 JN.1.1.3 JN.1.1.3+JN.1.6.1+JN.1.18
sars#390 JN.1.6.1 JN.1.1.3+JN.1.6.1+JN.1.18
sars#390 JN.1.18 JN.1.1.3+JN.1.6.1+JN.1.18
sars#391 JN.2.3 JN.2.3
sars#392 HN.8 HN.8
sars#393 XDM XDM
Expand All @@ -1333,3 +1352,23 @@ sars#397 KL.1 KL.1
sars#398 HK.3.14 HK.3.14
sars#399 JN.1.10 JN.1.10
sars#400 JN.1.11 JN.1.11
sars#401 XDN XDN
sars#402 XDP XDP
sars#403 JN.3.2 JN.3.2+JN.3.2.1
sars#403 JN.3.2.1 JN.3.2+JN.3.2.1
sars#404 JN.11 JN.11
sars#405 JN.12 JN.12
sars#408 JN.1.4.1 JN.1.4.1
sars#409 JN.1.2.1 JN.1.2.1
sars#410 JN.1.12 JN.1.12+JN.1.11.1+JN.1.16
sars#410 JN.1.11.1 JN.1.12+JN.1.11.1+JN.1.16
sars#410 JN.1.16 JN.1.12+JN.1.11.1+JN.1.16
sars#411 XDQ XDQ
sars#412 XDR XDR
sars#413 JN.1.4.2 JN.1.4.2
sars#414 XDS XDS
sars#415 JN.1.21 JN.1.21
sars#416 XDT XDT
sars#417 JN.1.1.4 JN.1.1.4
sars#418 HK.13.2.1 HK.13.2.1
sars#419 KP.1 KP.1
65 changes: 12 additions & 53 deletions autoref/missing_refs.txt
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@@ -1,54 +1,13 @@
KG.1 sars-cov-2-variants/lineage-proposals#951
DV.7.1.8 sars-cov-2-variants/lineage-proposals#860
JN.1.1.2 sars-cov-2-variants/lineage-proposals#1147
JN.1.1.3 sars-cov-2-variants/lineage-proposals#1089
JN.1.6.1 sars-cov-2-variants/lineage-proposals#1089
JN.1.7 sars-cov-2-variants/lineage-proposals#1097
JN.1.8.1 sars-cov-2-variants/lineage-proposals#1097
JN.1.9 #2410
JN.1.10 sars-cov-2-variants/lineage-proposals#1135
JN.2.2 #2433
JN.2.5 sars-cov-2-variants/lineage-proposals#1173
JN.1.2.1 sars-cov-2-variants/lineage-proposals#1322
JN.1.4.1 sars-cov-2-variants/lineage-proposals#1175
JN.1.9.1 sars-cov-2-variants/lineage-proposals#1097
JN.1.11.1 sars-cov-2-variants/lineage-proposals#1253
KP.1 sars-cov-2-variants/lineage-proposals#1364
JN.1.12 sars-cov-2-variants/lineage-proposals#1253
JN.1.13 #2464
JN.1.16 sars-cov-2-variants/lineage-proposals#1253
JN.1.18 sars-cov-2-variants/lineage-proposals#1089
JN.1.21 sars-cov-2-variants/lineage-proposals#1162
JN.12 sars-cov-2-variants/lineage-proposals#1102
JH.2 #2068
GK.1.8 sars-cov-2-variants/lineage-proposals#643
GK.1.8.1 sars-cov-2-variants/lineage-proposals#1127
GK.1.11 sars-cov-2-variants/lineage-proposals#643
GK.3.1 sars-cov-2-variants/lineage-proposals#643
KK.1 sars-cov-2-variants/lineage-proposals#1210
KK.2 sars-cov-2-variants/lineage-proposals#1277
XBB.1.5.108 sars-cov-2-variants/lineage-proposals#550
XBB.1.5.109 #2262
HN.4.1 sars-cov-2-variants/lineage-proposals#1054
HN.4.1.1 sars-cov-2-variants/lineage-proposals#1054
HN.4.2 sars-cov-2-variants/lineage-proposals#971
FL.1.8 sars-cov-2-variants/lineage-proposals#1058
FL.2.7 sars-cov-2-variants/lineage-proposals#552
FL.2.7.1 sars-cov-2-variants/lineage-proposals#552
FL.10 sars-cov-2-variants/lineage-proposals#28
FL.24.1 sars-cov-2-variants/lineage-proposals#789
FL.38 sars-cov-2-variants/lineage-proposals#1001
HK.3.14 sars-cov-2-variants/lineage-proposals#978
JG.3.4 sars-cov-2-variants/lineage-proposals#1081
KL.1 sars-cov-2-variants/lineage-proposals#1174
HV.1.8 #2432
HV.1.9 sars-cov-2-variants/lineage-proposals#957
HV.1.10 sars-cov-2-variants/lineage-proposals#1044
HV.2 sars-cov-2-variants/lineage-proposals#537
EG.7 sars-cov-2-variants/lineage-proposals#56
FP.2 sars-cov-2-variants/lineage-proposals#31
JF.1.1.1 sars-cov-2-variants/lineage-proposals#643
JF.3 sars-cov-2-variants/lineage-proposals#976
XBB.1.16.28 sars-cov-2-variants/lineage-proposals#1000
XBB.1.16.29 sars-cov-2-variants/lineage-proposals#524
XBB.1.16.30 sars-cov-2-variants/lineage-proposals#554
FY.1.2.1 sars-cov-2-variants/lineage-proposals#863
FW.1.1.1 sars-cov-2-variants/lineage-proposals#1242
GE.1.2.1 sars-cov-2-variants/lineage-proposals#1103
XBB.2.3.21 sars-cov-2-variants/lineage-proposals#281
XBC.1.7 sars-cov-2-variants/lineage-proposals#110
XBL.3.1 sars-cov-2-variants/lineage-proposals#44
XDA.1 sars-cov-2-variants/lineage-proposals#1031
XDD.1 sars-cov-2-variants/lineage-proposals#1203
XDD.1.1 sars-cov-2-variants/lineage-proposals#1203
XDD.2 sars-cov-2-variants/lineage-proposals#1176
XDH sars-cov-2-variants/lineage-proposals#128
GN.1.4 #2349
27 changes: 14 additions & 13 deletions lineage_notes.txt
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Expand Up @@ -1058,10 +1058,10 @@ JN.1.1.4 Alias of B.1.1.529.2.86.1.1.1.4, S:V1264L, after C9142T, from #2476
JN.1.1.5 Alias of B.1.1.529.2.86.1.1.1.5, S:R346T, after C9142T
KR.1 Alias of B.1.1.529.2.86.1.1.1.5.1, S:F456L, after C28498T
JN.1.2 Alias of B.1.1.529.2.86.1.1.2, S:M1229I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1087
JN.1.2.1 Alias of B.1.1.529.2.86.1.1.2.1, S:H1101Y, Ireland
JN.1.2.1 Alias of B.1.1.529.2.86.1.1.2.1, S:H1101Y, Ireland, from sars-cov-2-variants/lineage-proposals#1322
JN.1.3 Alias of B.1.1.529.2.86.1.1.3, ORF8:Q18*, Netherlands
JN.1.4 Alias of B.1.1.529.2.86.1.1.4, ORF1a:T170I, Denmark/Singapore, from #2381
JN.1.4.1 Alias of B.1.1.529.2.86.1.1.4.1, S:E654V, Ireland
JN.1.4.1 Alias of B.1.1.529.2.86.1.1.4.1, S:E654V, Ireland, from sars-cov-2-variants/lineage-proposals#1175
JN.1.4.2 Alias of B.1.1.529.2.86.1.1.4.2, S:N185D, USA, from #2462
JN.1.4.3 Alias of B.1.1.529.2.86.1.1.4.3, S:T572I, USA, from #2487
KQ.1 Alias of B.1.1.529.2.86.1.1.4.3.1, S:R346T, USA
Expand All @@ -1074,25 +1074,26 @@ JN.1.7.2 Alias of B.1.1.529.2.86.1.1.7.2, ORF1b:C1563F, Americas
JN.1.8 Alias of B.1.1.529.2.86.1.1.8, ORF7a:T28I
JN.1.8.1 Alias of B.1.1.529.2.86.1.1.8.1, S:T572I, USA/Denmark, from sars-cov-2-variants/lineage-proposals#1097
JN.1.9 Alias of B.1.1.529.2.86.1.1.9, S:Q183H, USA/UK/Canada, from #2410
JN.1.9.1 Alias of B.1.1.529.2.86.1.1.9.1, S:T572I, ORF1a:A3143V
JN.1.9.1 Alias of B.1.1.529.2.86.1.1.9.1, S:T572I, ORF1a:A3143V, from sars-cov-2-variants/lineage-proposals#1097
JN.1.10 Alias of B.1.1.529.2.86.1.1.10, S:T95I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1135
JN.1.11 Alias of B.1.1.529.2.86.1.1.11, S:V1104L, G17334T, India, from #2446
JN.1.11.1 Alias of B.1.1.529.2.86.1.1.11.1, S:F456L, after ORF1a:T2283I, India
KP.1 Alias of B.1.1.529.2.86.1.1.11.1.1, S:K1086R
JN.1.11.1 Alias of B.1.1.529.2.86.1.1.11.1, S:F456L, after ORF1a:T2283I, India, from sars-cov-2-variants/lineage-proposals#1253
KP.1 Alias of B.1.1.529.2.86.1.1.11.1.1, S:K1086R, from sars-cov-2-variants/lineage-proposals#1364
KP.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1, S:R346T
KP.2 Alias of B.1.1.529.2.86.1.1.11.1.2, S:R346T on JN.1.11.1 polytomy
JN.1.12 Alias of B.1.1.529.2.86.1.1.12, S:F456V, ORF7a:A8T
JN.1.13 Alias of B.1.1.529.2.86.1.1.13, S:A1087S, after C26894T,C25680T, USA
JN.1.12 Alias of B.1.1.529.2.86.1.1.12, S:F456V, ORF7a:A8T, from sars-cov-2-variants/lineage-proposals#1253
JN.1.13 Alias of B.1.1.529.2.86.1.1.13, S:A1087S, after C26894T,C25680T, USA, from #2464
JN.1.13.1 Alias of B.1.1.529.2.86.1.1.13.1, S:R346T, S:F59S, USA
JN.1.14 Alias of B.1.1.529.2.86.1.1.14, S:R346S, USA
JN.1.15 Alias of B.1.1.529.2.86.1.1.15, S:A688V
JN.1.16 Alias of B.1.1.529.2.86.1.1.16, S:F456L
JN.1.16 Alias of B.1.1.529.2.86.1.1.16, S:F456L, from sars-cov-2-variants/lineage-proposals#1253
JN.1.17 Alias of B.1.1.529.2.86.1.1.17, S:A222V, USA
JN.1.18 Alias of B.1.1.529.2.86.1.1.18, S:R346T, directly on JN.1 polytomy
JN.1.18 Alias of B.1.1.529.2.86.1.1.18, S:R346T, directly on JN.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089
JN.1.19 Alias of B.1.1.529.2.86.1.1.19, ORF8:I71V
JN.1.20 Alias of B.1.1.529.2.86.1.1.20, S:S31F, directly on JN.1 polytomy
JN.1.21 Alias of B.1.1.529.2.86.1.1.21, S:H1058Y
JN.1.21 Alias of B.1.1.529.2.86.1.1.21, S:H1058Y, from sars-cov-2-variants/lineage-proposals#1162
JN.1.22 Alias of B.1.1.529.2.86.1.1.22, ORF1a:S505F, C13019T, from #2465

JN.1.23 Alias of B.1.1.529.2.86.1.1.23, S:K444R, S:Y453F, ORF1a:A307V, ORF1a:P2144L, Brazil, from #2488
JN.1.24 Alias of B.1.1.529.2.86.1.1.24, S:C1243F, USA
JN.1.25 Alias of B.1.1.529.2.86.1.1.25, C706T, A7708T, India
Expand All @@ -1116,7 +1117,7 @@ JN.8 Alias of B.1.1.529.2.86.1.8, S:T299I, Sweden/Denmark
JN.9 Alias of B.1.1.529.2.86.1.9, S:M1229I, Netherlands
JN.10 Alias of B.1.1.529.2.86.1.10, S:A475V, on T3565C branch with JN.1, Spain/France, from sars-cov-2-variants/lineage-proposals#954
JN.11 Alias of B.1.1.529.2.86.1.11, S:V1104L, Asia, from sars-cov-2-variants/lineage-proposals#1303
JN.12 Alias of B.1.1.529.2.86.1.12, S:F456V, ORF1a:A498G
JN.12 Alias of B.1.1.529.2.86.1.12, S:F456V, ORF1a:A498G, from sars-cov-2-variants/lineage-proposals#1102
BA.2.86.2 Alias of B.1.1.529.2.86.2, ORF7a:E22D, South Africa/Botswana，from sars-cov-2-variants/lineage-proposals/issues/756
BA.2.86.3 Alias of B.1.1.529.2.86.3, C222T, C1960T, T12775C, South Africa
JQ.1 Alias of B.1.1.529.2.86.3.1, S:T95I, Denmark/France/South Africa, from sars-cov-2-variants/lineage-proposals#906
Expand Down Expand Up @@ -1584,7 +1585,7 @@ FB.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.1 S:D253G, Singapore/Taiwan/Japan, fro
FB.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.2 S:478R, USA/South Korea/Mongolia
BQ.1.2.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2, S:K147E, S:R346T, S:V445A, West Africa, from #1861
JH.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.1, S:K182E, S:486A, S:S494P, S:E554K, from #2068
JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from sars-cov-2-variants/lineage-proposals#650, from #2068, from #2068, from #2068
JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from sars-cov-2-variants/lineage-proposals#650, from #2068, from #2068, from #2068, from #2068
BQ.1.2.3 Alias of B.1.1.529.5.3.1.1.1.1.1.2.3, E:V24L, Canada
BQ.1.3 Alias of B.1.1.529.5.3.1.1.1.1.1.3, found globally, defined by S:E619Q, from #1082
BQ.1.3.1 Alias of B.1.1.529.5.3.1.1.1.1.1.3.1, C2509T, Spain
Expand Down Expand Up @@ -2950,7 +2951,7 @@ GN.1 Alias of XBB.1.5.73.1, S:F456L (T22928C), Peru/Costa Rica
GN.1.1 Alias of XBB.1.5.73.1.1, ORF1b:A1643V, Peru
GN.1.2 Alias of XBB.1.5.73.1.2, S:Q321L
GN.1.3 Alias of XBB.1.5.73.1.3, S:L455F (G22927T), from sars-cov-2-variants/lineage-proposals#816
GN.1.4 Alias of XBB.1.5.73.1.4, S:G181V, Peru
GN.1.4 Alias of XBB.1.5.73.1.4, S:G181V, Peru, from #2349
GN.2 Alias of XBB.1.5.73.2, ORF3a:A99G, Peru
GN.3 Alias of XBB.1.5.73.3, C27143T, Peru
GN.4 Alias of XBB.1.5.73.4, ORF1a:Q3966L, Peru
Expand Down
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