JN.1+S:F456L+Orf1a:Y1734H,S:S60P starting and still circulating in Vietnam(65 seqs, 12 countries with two S:T572I branches 9 and 6 seqs )

[xz-keg]

From branch 110 of sars-cov-2-variants/lineage-proposals#1253

Like LF.8, this is another lineage messed up by inaccurate proposals of DailyCovidCases.
As it clearly emerges in undersampled regions and is still growing, re-propose it according to the updated usher tree.

JN.1+C19374T+T22928C(S:F456L)+C9988T+T5465C,T21740C(S:S60P,Orf1a:Y1734H)

GISAID query: C9988T,T21740C,C19374T
No. of seqs: 34(Australia 1 Canada 11 France 1 South Korea 7 China 1 USA 13(2 from Vietnam))

First: EPI_ISL_19191562, USA from Vietnam, 2024-5-20
Latest: EPI_ISL_19352622, South Korea, 2024-7-29

GISAID query for S:T572I, Orf1a:V1071I branch:A1732G,G3476A,C23277T (7 seqs)
GISAID query for S:T572I, S680P branch: C23277T,T23600C, C9988T (4 seqs)

usher

[FedeGueli]

Thx for rescuing it.

[xz-keg]

45, Japan (1 local and 2 from Vietnam)

[DailyCovidCases]

47 seqs now:
usher

ping @corneliusroemer Could this branch be designated?

[DailyCovidCases]

Tracked in tracker110

[FedeGueli]

9/48 in August

[FedeGueli]

9 for the 572i branch with the most recent sample belonging to that from Scotland new country

[DailyCovidCases]

This branch has slowed down a lot. You can close this.

[FedeGueli]

54 fading away worth closing it

[xz-keg]

+1 China from Russia

[FedeGueli]

from Russia

still one only from September it is likely dying off.

[xz-keg]

+1 Luxembourg

[DailyCovidCases]

Slow closing it down

[xz-keg]

dead