Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

FL.21 sublineage with S:D1084N circulating in South Korea(112 seq, 6 countries) with a sub branch with S:E554A (29 seqs, 2 countries) #2143

Closed
Over-There-Is opened this issue Jul 26, 2023 · 1 comment
Milestone

Comments

@Over-There-Is
Copy link
Contributor

Over-There-Is commented Jul 26, 2023

FL.21>G24812A(S:D1084N)

Transferred from sars-cov-2-variants/lineage-proposals#310
The second largest branch of FL.21, mainly circulating in South Korea.

Query: A10564T, G24812A
Query for the sub branch with S:E554A: A10564T, G24812A, A23223C

Earliest Sequence: 03-15 South Korea EPI_ISL_17416089
Latest Sequence: 07-04 Miyagi, Japan EPI_ISL_18040361
Regions Detected: South Korea 103(2 from Hungary, 1 from Vietnam), US 5(Illinois 1, New York 4[2 from France, 2 airport screening]), Japan 4(Miyagi 3, Aichi 1)

usher
2023-07-26 (69)

And also 6 Korean sequences with only spike gene (2 /w S:E554A):
Query: -A10564T, T23018C, T23019C, G24812A, Asia / South Korea
Query for the sub branch with S:E554A: -A10564T, G24812A, A23223C, Asia / South Korea

Sequences:

EPI_ISL_17416089, EPI_ISL_17474202, EPI_ISL_17538340,
EPI_ISL_17538970, EPI_ISL_17563149, EPI_ISL_17563510-17563511,
EPI_ISL_17563894, EPI_ISL_17564203, EPI_ISL_17604126,
EPI_ISL_17604319, EPI_ISL_17604509, EPI_ISL_17605279,
EPI_ISL_17647080, EPI_ISL_17647312, EPI_ISL_17647712,
EPI_ISL_17648476, EPI_ISL_17677458, EPI_ISL_17677474,
EPI_ISL_17690590, EPI_ISL_17690642, EPI_ISL_17690852-17690853,
EPI_ISL_17690907, EPI_ISL_17691393, EPI_ISL_17691407,
EPI_ISL_17691481, EPI_ISL_17691511, EPI_ISL_17691576,
EPI_ISL_17723168, EPI_ISL_17723763, EPI_ISL_17723886-17723887,
EPI_ISL_17723907, EPI_ISL_17730353, EPI_ISL_17730809,
EPI_ISL_17740690-17740691, EPI_ISL_17741074, EPI_ISL_17741235,
EPI_ISL_17741293, EPI_ISL_17741444, EPI_ISL_17778935,
EPI_ISL_17778949, EPI_ISL_17779369, EPI_ISL_17779508,
EPI_ISL_17779662, EPI_ISL_17779670, EPI_ISL_17779810,
EPI_ISL_17791879, EPI_ISL_17791929, EPI_ISL_17792387,
EPI_ISL_17792406, EPI_ISL_17804392, EPI_ISL_17806987,
EPI_ISL_17807266, EPI_ISL_17807326, EPI_ISL_17807735,
EPI_ISL_17807739, EPI_ISL_17807799, EPI_ISL_17807913,
EPI_ISL_17816709-17816710, EPI_ISL_17816741, EPI_ISL_17834671,
EPI_ISL_17834716, EPI_ISL_17834802, EPI_ISL_17834901,
EPI_ISL_17835089, EPI_ISL_17835341, EPI_ISL_17835526,
EPI_ISL_17835536, EPI_ISL_17835572, EPI_ISL_17835723,
EPI_ISL_17835728, EPI_ISL_17835771, EPI_ISL_17927834,
EPI_ISL_17927968, EPI_ISL_17928017, EPI_ISL_17928020,
EPI_ISL_17928022, EPI_ISL_17930351-17930352, EPI_ISL_17930524,
EPI_ISL_17930738, EPI_ISL_17930770, EPI_ISL_17930788,
EPI_ISL_17969516, EPI_ISL_17969649, EPI_ISL_17970094,
EPI_ISL_17970231, EPI_ISL_17970350, EPI_ISL_17970391,
EPI_ISL_17983473, EPI_ISL_17983597, EPI_ISL_17983631,
EPI_ISL_17983674, EPI_ISL_17984145, EPI_ISL_17984409,
EPI_ISL_18006638, EPI_ISL_18006680, EPI_ISL_18006973,
EPI_ISL_18030754, EPI_ISL_18030792, EPI_ISL_18031032,
EPI_ISL_18031269, EPI_ISL_18031381, EPI_ISL_18031407,
EPI_ISL_18031544, EPI_ISL_18031593, EPI_ISL_18038785,
EPI_ISL_18040361

Spike-only sequences:
EPI_ISL_17725828, EPI_ISL_17725890, EPI_ISL_17725987,
EPI_ISL_17812000, EPI_ISL_17973587, EPI_ISL_18032896

@Over-There-Is Over-There-Is changed the title FL.21 sublineage with S:D1084N circulating in South Korea(111 seq, 6 countries) with a sub branch with S:E554A (28 seqs, 2 countries) FL.21 sublineage with S:D1084N circulating in South Korea(112 seq, 6 countries) with a sub branch with S:E554A (29 seqs, 2 countries) Jul 26, 2023
@corneliusroemer
Copy link
Contributor

Designated, in general I'm careful with South Korean lineages like this as South Korea sequences sooo much more than almost any other country. In general, I'd wait for there to be significant outside South Korea spread before designation.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants