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Update lineage_notes.txt
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FL*/EG* corrections; replace further mutations like T478R or K478R to 478R
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NkRMnZr authored Oct 14, 2023
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Showing 1 changed file with 21 additions and 21 deletions.
42 changes: 21 additions & 21 deletions lineage_notes.txt
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Expand Up @@ -685,7 +685,7 @@ CM.2 Alias of B.1.1.529.2.3.20.2, international, ORF1a:S2103F
CM.2.1 Alias of B.1.1.529.2.3.20.2.1, Indonesia/Australia, S:F486S, issue #1356
CM.3 Alias of B.1.1.529.2.3.20.3, USA/South Korea/Australia, S:G485D
CM.4 Alias of B.1.1.529.2.3.20.4, USA/Singapore/SouthKorea, ORF1b:D146G
CM.4.1 Alias of B.1.1.529.2.3.20.4.1, S:K478R, Philippines/Japan/USA
CM.4.1 Alias of B.1.1.529.2.3.20.4.1, S:478R, Philippines/Japan/USA
CM.5 Alias of B.1.1.529.2.3.20.5, global, 10802T
CM.5.1 Alias of B.1.1.529.2.3.20.5.1, S:Q675R
CM.5.2 Alias of B.1.1.529.2.3.20.5.2, S:G485D, USA/Australia, from issue #1386
Expand Down Expand Up @@ -878,7 +878,7 @@ DV.6.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6.1, S:Q613H, T15591C, Central Euro
DV.6.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6.2, S:Q613H, C6628T, Asia, from #2045
DV.7 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7, S:L858I, ORF1a:A3548V, England, from #2038
DV.7.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1, S:L455F, S:F456L(T22928C), Spain/Austria, from sars-cov-2-variants/lineage-proposals#135
DV.7.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.1, S:K679R, Spain, from sars-cov-2-variants/lineage-proposals#732
DV.7.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.1, S:679R, Spain, from sars-cov-2-variants/lineage-proposals#732
DV.7.1.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2, ORF1a:A4162V, Spain/England, from #2258
DV.7.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.2, C703T, England
DV.8 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.8, S:Q613H, C8299T, C19602T, Sweden
Expand Down Expand Up @@ -1390,7 +1390,7 @@ BQ.1.1.8 Alias of B.1.1.529.5.3.1.1.1.1.1.1.8, ORF1a:H374Y, ORF1a:L969F
DP.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.8.1, S:A352S, England/Belgium
BQ.1.1.9 Alias of B.1.1.529.5.3.1.1.1.1.1.1.9, S:S151I
BQ.1.1.10 Alias of B.1.1.529.5.3.1.1.1.1.1.1.10, S:Y144-, T16413C, Denmark/Germany
FA.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.10.1, S:K478R, USA
FA.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.10.1, S:478R, USA
FA.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.10.2, S:T323I, Denmark
BQ.1.1.11 Alias of B.1.1.529.5.3.1.1.1.1.1.1.11, S:S494P
BQ.1.1.12 Alias of B.1.1.529.5.3.1.1.1.1.1.1.12, France/US, S:S494P, on ORF1a:T4368I branch
Expand Down Expand Up @@ -2742,8 +2742,8 @@ EU.1.1 Alias of XBB.1.5.26.1.1, S:I410V, Germany/Netherlands, from #1688
EU.1.1.1 Alias of XBB.1.5.26.1.1.1, C21646T, Germany
EU.1.1.2 Alias of XBB.1.5.26.1.1.2, S:A1070S, Germany/Finland/Denmark/Sweden
EU.1.1.3 Alias of XBB.1.5.26.1.1.3, S:F157L, Europe, from sars-cov-2-variants/lineage-proposals#312
XBB.1.5.27 S:K478R, on T11431C branch, USA
XBB.1.5.28 S:K478R, on 17124C polytomy, USA
XBB.1.5.27 S:478R, on T11431C branch, USA
XBB.1.5.28 S:478R, on 17124C polytomy, USA
XBB.1.5.29 S:A348V, USA-NE
XBB.1.5.30 S:A348T, USA, from #1660
HM.1 Alias of XBB.1.5.30.1, S:N481K, Canada/Australia, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/59
Expand All @@ -2760,7 +2760,7 @@ XBB.1.5.39 ORF1a:M3684T, USA/Canada
FT.1 Alias of XBB.1.5.39.1, S:I197V, Canada, #1745
FT.2 Alias of XBB.1.5.39.2, S:K1045N, Canada-QC/USA-NY
FT.3 Alias of XBB.1.5.39.3, S:Q52H, USA, from sars-cov-2-variants/lineage-proposals#266
FT.3.1 Alias of XBB.1.5.39.3.1, S:K478R, S:D1168H, Canada/USA, from sars-cov-2-variants/lineage-proposals#266
FT.3.1 Alias of XBB.1.5.39.3.1, S:478R, S:D1168H, Canada/USA, from sars-cov-2-variants/lineage-proposals#266
FT.3.1.1 Alias of XBB.1.5.39.3.1.1, S:A348S, USA, from #2140
FT.4 Alias of XBB.1.5.39.4, S:E180Q, Germany
XBB.1.5.40 S:478I, USA
Expand Down Expand Up @@ -2792,7 +2792,7 @@ XBB.1.5.51 ORF1a:D3009A, USA
XBB.1.5.52 C3589T
XBB.1.5.53 S:F140I, S:L582F, S:R403K, South Africa，from #1804
JB.1 Alias of XBB.1.5.53.1, S:N148T, South Africa
JB.2 Alias of XBB.1.5.53.2, S:K478R, South Africa/USA, from sars-cov-2-variants/lineage-proposals#209
JB.2 Alias of XBB.1.5.53.2, S:478R, South Africa/USA, from sars-cov-2-variants/lineage-proposals#209
JB.2.1 Alias of XBB.1.5.53.2.1, S:H245Y, S:E554D, South Africa, from sars-cov-2-variants/lineage-proposals#209
XBB.1.5.54 C14358T,C20016T,C29311T, Central/Eastern Europe
XBB.1.5.55 ORF1a:T3356I, USA/Canada
Expand All @@ -2811,7 +2811,7 @@ XBB.1.5.65 C583T, Germany
XBB.1.5.66 ORF1a:G519S, USA
XBB.1.5.67 C21691T, USA
XBB.1.5.68 S:P521T, ORF3a:L71I, C18501T, USA
HZ.1 Alias of XBB.1.5.68.1, S:K478R, 23266T, USA, from sars-cov-2-variants/lineage-proposals#514
HZ.1 Alias of XBB.1.5.68.1, S:478R, 23266T, USA, from sars-cov-2-variants/lineage-proposals#514
HZ.2 Alias of XBB.1.5.68.2, ORF1a:H3580Y, USA
HZ.3 Alias of XBB.1.5.68.3, ORF1a:I3693T, USA
XBB.1.5.69 ORF1a:V2943I,C22513T, USA
Expand Down Expand Up @@ -2895,7 +2895,7 @@ XBB.1.7 USA-NY, S:V608I
XBB.1.8 Denmark, S:186insSGG, C3241T, from #1455
XBB.1.9 ORF1a:G1819S, ORF1a:T4175I
XBB.1.9.1 S:F486P (after C11956T), Indonesia/Singapore/Malaysia/England
FL.1 Alias of XBB.1.9.1.1, S:701V, ORF1a:G993S, from #1808
FL.1 Alias of XBB.1.9.1.1, S:A701V, ORF1a:G993S, from #1808
FL.1.1 Alias of XBB.1.9.1.1.1, ORF1b:Q2635P, USA/Australia
FL.1.1.1 Alias of XBB.1.9.1.1.1.1, S:A688S, Australia/Mauritius
FL.1.2 Alias of XBB.1.9.1.1.2, ORF1a:T4311I, South Korea/Italy/Spain
Expand All @@ -2909,7 +2909,7 @@ FL.1.6 Alias of XBB.1.9.1.1.6, S:N481K, S:Q1208H, from sars-cov-2-variants/linea
FL.1.7 Alias of XBB.1.9.1.1.7, S:478R, S:C1235F, Indonesia, from #1985
FL.2 Alias of XBB.1.9.1.2, T4579A
FL.2.1 Alias of XBB.1.9.1.2.1, C10228T, Germany, global
FL.2.2 Alias of XBB.1.9.1.2.2, S:T478R, Indonesia, from #1927
FL.2.2 Alias of XBB.1.9.1.2.2, S:478R, Indonesia, from #1927
FL.2.2.1 Alias of XBB.1.9.1.2.2.1, S:T307I, Indonesia, from #2027
FL.2.3 Alias of XBB.1.9.1.2.3, ORF1b:K1383R, China, from #2016
FL.2.3.1 Alias of XBB.1.9.1.2.3.1, S:K356T, China
Expand All @@ -2919,11 +2919,11 @@ FL.2.6 Alias of XBB.1.9.1.2.6, S:N641K, from #2180
FL.3 Alias of XBB.1.9.1.3, T1753C, England
FL.3.1 Alias of XBB.1.9.1.3.1, ORF1a:T2264I, England
FL.3.2 Alias of XBB.1.9.1.3.2, T8830C, England/Spain
FL.3.3 Alias of XBB.1.9.1.3.3, ORF1a:A4285V,ORF1a:V2998I,ORF1a:E772K, England
FL.3.3 Alias of XBB.1.9.1.3.3, ORF1a:A4285V, ORF1a:V2998I, ORF1a:E772K, England
FL.3.4 Alias of XBB.1.9.1.3.4, G10642C, T26232C, England
FL.4 Alias of XBB.1.9.1.4, ORF1b:V1092F
FL.4.1 Alias of XBB.1.9.1.4.1, S:N450I
FL.4.1.1 Alias of XBB.1.9.1.4.1.1, S:K478R, ORF1a:I2286T, Indonesia/Australia, from sars-cov-2-variants/lineage-proposals#107
FL.4.1.1 Alias of XBB.1.9.1.4.1.1, S:478R, ORF1a:I2286T, Indonesia/Australia, from sars-cov-2-variants/lineage-proposals#107
FL.4.2 Alias of XBB.1.9.1.4.2, ORF1a:T951I, China
FL.4.3 Alias of XBB.1.9.1.4.3, S:A766S, G7393T, Myanmar, from sars-cov-2-variants/lineage-proposals#153
FL.4.4 Alias of XBB.1.9.1.4.4, ORF1a:T1542I, T24544C, S:478T (reversion), Indonesia
Expand Down Expand Up @@ -2980,7 +2980,7 @@ FL.25 Alias of XBB.1.9.1.25, S:E554K, USA/England, from #2040
FL.26 Alias of XBB.1.9.1.26, C22264T
FL.26.1 Alias of XBB.1.9.1.26.1, S:493L, Sweden
FL.27 Alias of XBB.1.9.1.27, ORF1a:V3747I
FL.28 Alias of XBB.1.9.1.28, S:K478R, ORF1a:S1520F, ORF3a:R68I, Spain
FL.28 Alias of XBB.1.9.1.28, S:478R, ORF1a:S1520F, ORF3a:R68I, Spain
FL.29 Alias of XBB.1.9.1.29, S:490S, ORF1b:I2331V from #2030
FL.30 Alias of XBB.1.9.1.30, S:484K, Greece, from #2206
FL.31 Alias of XBB.1.9.1.31, ORF1b:M657I
Expand All @@ -2991,7 +2991,7 @@ FL.33 Alias of XBB.1.9.1.33, ORF1b:A1377V
FL.33.1 Alias of XBB.1.9.1.33.1, S:478R, Georgia, from sars-cov-2-variants/lineage-proposals#828
FL.34 Alias of XBB.1.9.1.34, S:D1118Y
FL.35 Alias of XBB.1.9.1.35, ORF8:S103L, South Africa
FL.36 Alias of XBB.1.9.1.36, S:76I, S:190S, S:356T, S:572I, S:899S, S:1070T, England/US/Denmark, sars-cov-2-variants/lineage-proposals#805
FL.36 Alias of XBB.1.9.1.36, S:T76I, S:R190S, S:K356T, S:T572I, S:A899S, S:A1070T, England/US/Denmark, sars-cov-2-variants/lineage-proposals#805
XBB.1.9.2 S:F486P (after 27507C, 16878T), Indonesia/Singapore，from #1602
EG.1 Alias of XBB.1.9.2.1, S:Q613H on N:L219F branch, from #1664 and https://github.com/jmcbroome/auto-pango-designation/pull/193
EG.1.1 Alias of XBB.1.9.2.1.1, S:V70F and ORF1a:T403I, Luxembourg/Belgium/France
Expand Down Expand Up @@ -3039,9 +3039,9 @@ HK.13.1 Alias of XBB.1.9.2.5.1.1.13.1, C13378T, A24604G
HK.13.2 Alias of XBB.1.9.2.5.1.1.13.2, S:F797L, S:D1153H
HK.14 Alias of XBB.1.9.2.5.1.1.14, S:L455F (G22927C), on C11779T branch, China
HK.15 Alias of XBB.1.9.2.5.1.1.15, S:A262T, on C11779T branch
HK.16 Alias of XBB.1.9.2.5.1.1.16, N:P67S, S:A684V, S:V1264L
HK.16 Alias of XBB.1.9.2.5.1.1.16, N:P67S, S:A684V, S:V1264L, on C11779T branch
HK.17 Alias of XBB.1.9.2.5.1.1.17, S:S494P, China
HK.18 Alias of XBB.1.9.2.5.1.1.18, S:L452R
HK.18 Alias of XBB.1.9.2.5.1.1.18, S:L452R, N:Q7K
HK.19 Alias of XBB.1.9.2.5.1.1.19, S:F157L
EG.5.1.2 Alias of XBB.1.9.2.5.1.2, Japan, ORF1b:V1644I, from sars-cov-2-variants/lineage-proposals#301
EG.5.1.3 Alias of XBB.1.9.2.5.1.3, ORF1a:R542C, C22570T from https://github.com/sars-cov-2-variants/lineage-proposals/issues/222
Expand Down Expand Up @@ -3161,10 +3161,10 @@ XBB.1.17.1 Defined by S:215H, S:S486P, from issue #1712
GA.1 Alias of XBB.1.17.1.1, ORF1a:G728C
GA.2 Alias of XBB.1.17.1.2, ORF3a:I179F, T6640C, Africa
GA.2.1 Alias of XBB.1.17.1.2.1, S:E554K
GA.2.1.1 Alias of XBB.1.17.1.2.1.1, S:N450D, S:K478R
GA.2.1.1 Alias of XBB.1.17.1.2.1.1, S:N450D, S:478R
GA.3 Alias of XBB.1.17.1.3, ORF1b:A186V, Ghana
GA.4 Alias of XBB.1.17.1.4, S:K356T, ORF1a:N1080D, ORF1a:S2553F, Nigeria from https://github.com/sars-cov-2-variants/lineage-proposals/issues/265
GA.4.1 Alias of XBB.1.17.1.4.1, S:K478R, S:S704L, S:E554K, USA/Qatar, from sars-cov-2-variants/lineage-proposals#661
GA.4.1 Alias of XBB.1.17.1.4.1, S:478R, S:S704L, S:E554K, USA/Qatar, from sars-cov-2-variants/lineage-proposals#661
GA.4.1.1 Alias of XBB.1.17.1.4.1.1, S:Q675H
GA.4.1.2 Alias of XBB.1.17.1.4.1.2, S:T572I, England
GA.4.2 Alias of XBB.1.17.1.4.2, S:K558N, S:G1124S, England/Italy
Expand Down Expand Up @@ -3194,7 +3194,7 @@ GW.5 Alias of XBB.1.19.1.5, S:K478I, S:L455F, S:F456L(T22928C), Pakistan, from #
GW.5.1 Alias of XBB.1.19.1.5.1, ORF3a:W149C, Pakistan
GW.5.1.1 Alias of XBB.1.19.1.5.1.1, S:A475V, S:F79S, Pakistan, from #2277
GW.5.2 Alias of XBB.1.19.1.5.2, N:T379I
GW.5.3 Alias of XBB.1.19.1.5.3, T20310C, C28519T
GW.5.3 Alias of XBB.1.19.1.5.3, ORF9b:T79I, T20310C
GW.5.3.1 Alias of XBB.1.19.1.5.3.1, S:A475V, S:G184A
XBB.1.19.2 Defined by S:P521S, Pakistan, from sars-cov-2-variants/lineage-proposals#233
XBB.1.20 Defined by ORF3a:A72V, ORF1a:P4312T on C541T, pre ORF8:8* branch, Malaysia
Expand Down Expand Up @@ -3320,11 +3320,11 @@ HG.1 Alias of XBB.2.3.8.1, S:S98F, South Korea
HG.2 Alias of XBB.2.3.8.2, S:T259I, South Korea/USA, from sars-cov-2-variants/lineage-proposals#652
XBB.2.3.9 S:S98F, C18744T, C19200T, India
XBB.2.3.10 T5947C, India
GE.1 Alias of XBB.2.3.10.1, S:K478R, from #1866
GE.1 Alias of XBB.2.3.10.1, S:478R, from #1866
GE.1.1 Alias of XBB.2.3.10.1.1, S:E554K, Bangladesh/Singapore, from sars-cov-2-variants/lineage-proposals#367
GE.1.2 Alias of XBB.2.3.10.1.2, S:N148T, Kenya, from sars-cov-2-variants/lineage-proposals#200
GE.1.3 Alias of XBB.2.3.10.1.3, S:T732I, from sars-cov-2-variants/lineage-proposals#102
XBB.2.3.11 S:K478R, India, from #1866
XBB.2.3.11 S:478R, India, from #1866
GS.1 Alias of XBB.2.3.11.1, S:213D, C4582T, C25075T, Australia, from #2023
GS.2 Alias of XBB.2.3.11.2, S:T470N, Singapore/Brunei, from sars-cov-2-variants/lineage-proposals#93
GS.3 Alias of XBB.2.3.11.3, S:R190S, USA/UK, from sars-cov-2-variants/lineage-proposals#669
Expand Down

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