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Added new lineage XM from #472 with 22 new sequence designations
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chrisruis committed Mar 31, 2022
1 parent f6d4ff1 commit 79af657
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Showing 3 changed files with 25 additions and 1 deletion.
1 change: 1 addition & 0 deletions lineage_notes.txt
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Expand Up @@ -1654,6 +1654,7 @@ XH Recombinant lineage of BA.1 and BA.2, Denmark lineage, from pango-designation
XJ Recombinant lineage of BA.1 and BA.2, Finland lineage, from pango-designation issue #449
XK Recombinant lineage of BA.1 and BA.2, Belgium lineage, from pango-designation issue #460
XL Recombinant lineage of BA.1 and BA.2, UK lineage, from pango-designation issue #464
XM Recombinant lineage of BA.1.1 and BA.2, European lineage, from pango-designation issue #472
*A.2.1 Withdrawn: Lineage with sequences predominantly from Panama
*A.8 Withdrawn: Indian lineage merged with A.9
*A.10 Withdrawn: Spanish lineage reassigned to A.5
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22 changes: 22 additions & 0 deletions lineages.csv
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Expand Up @@ -1325910,3 +1325910,25 @@ Canada/ON-WTD-04645-24062/2021,B.1.641
Canada/ON-WTD-04649-D3262/2021,B.1.641
Canada/ON-WTD-04658-2372/2021,B.1.641
Canada/ON-PHL-21-44225/2021,B.1.641
Austria/LB-R00066-S223/2022,XM
Denmark/DCGC-443983/2022,XM
Germany/NW-RKI-I-614696/2022,XM
Germany/NW-RKI-I-575111/2022,XM
Denmark/DCGC-416401/2022,XM
Germany/BY-RKI-I-604479/2022,XM
Germany/BY-RKI-I-600602/2022,XM
Germany/BY-RKI-I-600178/2022,XM
Netherlands/NH-AUMC-004734/2022,XM
Denmark/DCGC-424640/2022,XM
Germany/NW-RKI-I-606629/2022,XM
Poland/Kce-3358/2022,XM
Denmark/DCGC-414145/2022,XM
Germany/NW-RKI-I-574784/2022,XM
Denmark/DCGC-429883/2022,XM
Netherlands/NH-AUMC-004178/2022,XM
Netherlands/NH-RIVM-92672/2022,XM
Netherlands/NH-RIVM-92722/2022,XM
Denmark/DCGC-395944/2022,XM
Germany/SH-RKI-I-566536/2022,XM
Germany/BY-RKI-I-593905/2022,XM
Croatia/31850/2022,XM
3 changes: 2 additions & 1 deletion pango_designation/alias_key.json
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Expand Up @@ -51,5 +51,6 @@
"XH": ["BA.1*","BA.2*"],
"XJ": ["BA.1*","BA.2*"],
"XK": ["BA.1*","BA.2*"],
"XL": ["BA.1*","BA.2*"]
"XL": ["BA.1*","BA.2*"],
"XM": ["BA.1.1*","BA.2*"]
}

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