Added lineage XF from #445 with 34 new sequence designations

lineage_notes.txt

@@ -1636,8 +1636,9 @@ B.61	Redesignated from B.40 (split), UK
 XA	Recombinant lineage with parental lineages B.1.1.7 and B.1.177, UK lineage
 XB	Recombinant lineage with parental lineages B.1.634 and B.1.631, Central and North America lineage, discussed in pango-designation issue #189. Formally B.1.628
 XC	Recombinant lineage with parental lineages AY.29 and B.1.1.7, Japan lineage, from pango-designation issue #263
-XD	Recombinant lineage of Delta and Omicron, France and Denmark lineage, from pango-designation issue #444
+XD	Recombinant lineage of Delta and BA.1, France and Denmark lineage, from pango-designation issue #444
 XE	Recombinant lineage of BA.1 and BA.2, UK lineage, from pango-designation issue #454
+XF	Recombinant lineage of Delta and BA.1, UK lineage, from pango-designation issue #445
 *A.2.1	Withdrawn: Lineage with sequences predominantly from Panama
 *A.8	Withdrawn: Indian lineage merged with A.9
 *A.10	Withdrawn: Spanish lineage reassigned to A.5

lineages.csv

@@ -1298108,3 +1298108,37 @@ Scotland/QEUH-36495D0/2022,XE
 England/HSLL-3648B75/2022,XE
 England/MILK-365F1F1/2022,XE
 England/MILK-3646E7E/2022,XE
+England/MILK-36E1AF9/2022,XF
+England/DHSC-CYB1NDG/2022,XF
+England/DHSC-CYBR1GP/2022,XF
+England/DHSC-CYY89OG/2022,XF
+England/MILK-3270598/2022,XF
+England/MILK-3251BB9/2022,XF
+England/MILK-327F0C5/2022,XF
+England/MILK-32F2D5A/2022,XF
+England/MILK-32A5DDE/2022,XF
+England/HSLL-32DE9C9/2022,XF
+England/MILK-335FD3C/2022,XF
+England/MILK-3394D0E/2022,XF
+England/MILK-3387366/2022,XF
+England/MILK-338970E/2022,XF
+England/MILK-33A6C1B/2022,XF
+England/MILK-33CD768/2022,XF
+England/HSLL-34107CF/2022,XF
+England/HSLL-345C897/2022,XF
+England/PHEC-YYNR51S/2022,XF
+England/PHEC-YYN8J41/2022,XF
+England/MILK-352138A/2022,XF
+England/MILK-352B292/2022,XF
+England/MILK-3548B2B/2022,XF
+England/MILK-3534D77/2022,XF
+England/MILK-354CDB8/2022,XF
+England/MILK-355A151/2022,XF
+England/MILK-357D361/2022,XF
+England/NORT-YB6X6S/2022,XF
+England/MILK-35A6CFB/2022,XF
+England/MILK-359F008/2022,XF
+England/MILK-358F6AF/2022,XF
+England/MILK-358F302/2022,XF
+England/MILK-3602CCF/2022,XF
+England/MILK-365F003/2022,XF

pango_designation/alias_key.json

@@ -45,5 +45,6 @@
     "XB": ["B.1.634","B.1.631"],
     "XC": ["AY.29","B.1.1.7"],
     "XD": ["B.1.617.2*","BA.1*"],
-    "XE": ["BA.1*","BA.2*"]
+    "XE": ["BA.1*","BA.2*"],
+    "XF": ["B.1.617.2*","BA.1*"]
 }