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Merge pull request #2246 from Over-There-Is/patch-3
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Update lineage_notes.txt
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@AngieHinrichs
AngieHinrichs authored Sep 5, 2023
2 parents 462412f + e2b2cf9 commit 3df30af
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66 changes: 33 additions & 33 deletions lineage_notes.txt
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Expand Up @@ -784,7 +784,7 @@ BA.2.44 Alias of B.1.1.529.2.44, mainly found in Belgium and Luxembourg, from pa
BA.2.45 Alias of B.1.1.529.2.45, mainly found in Sweden and Denmark, from pango-designation issue #616
BA.2.46 Alias of B.1.1.529.2.46, mainly found in Scotland, from pango-designation issue #626
BA.2.47 Alias of B.1.1.529.2.47, mainly found in Denmark, England, and USA, from pango-designation issue #631
BA.2.48 Alias of B.1.1.529.2.48, mainly found in USA, Scotland and England, from pango-designation issue #634
BA.2.48 Alias of B.1.1.529.2.48, ORF1a:T1322I, S:Y248S, T4579A, mainly found in USA, Scotland and England, from pango-designation issue #634
BA.2.49 Alias of B.1.1.529.2.49, mainly found in France, England and USA, from pango-designation issue #640
BA.2.50 Alias of B.1.1.529.2.50, mainly found in Scotland and England, from pango-designation issue #641
BA.2.51 Alias of B.1.1.529.2.51, mainly found in Denmark, from pango-designation issue #644
Expand Down Expand Up @@ -875,7 +875,7 @@ DV.6 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6, T15591C
DV.6.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6.1, S:Q613H, T15591C, Central Europe
DV.6.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6.2, S:Q613H, C6628T, Asia From #2045
DV.7 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7, S:L858I, ORF1a:A3548V, England, from #2038
DV.7.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1, S:L455F, S:F456L, Spain/Austria, from sars-cov-2-variants/lineage-proposals#135
DV.7.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1, S:L455F, S:F456L(T22928C), Spain/Austria, from sars-cov-2-variants/lineage-proposals#135
DV.7.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.2, C703T, England
DV.8 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.8, S:Q613H, C8299T, C19602T, Sweden
CH.1.1.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.2, defined by S:T883I, ORF1a:Y1846C, ORF1a:G2294S on T27576C branch
Expand Down Expand Up @@ -1087,7 +1087,7 @@ BA.5.1.22 Alias of B.1.1.529.5.1.22, mainly found in Europe, defined by ORF1b:S1
DH.1 Alias of B.1.1.529.5.1.22.1, found mainly in Denmark, from pango-designation issue #1242
BA.5.1.23 Alias of B.1.1.529.5.1.23, mainly found in Spain, defined by ORF1a:S302F, from pango-designation issue #1135
DE.1 Alias of B.1.1.529.5.1.23.1, S:A694V
DE.2 Alias of B.1.1.529.5.1.23.2, S:R346T, S:G181V
DE.2 Alias of B.1.1.529.5.1.23.2, S:R346T, S:G181V, T4579A
BA.5.1.24 Alias of B.1.1.529.5.1.24, mainly found in Finland, defined by ORF1b:V1271L, from pango-designation issue #1135
BA.5.1.25 Alias of B.1.1.529.5.1.25, mainly found in Mexico and Peru, defined by ORF7b:H42Y, from pango-designation issue #1135
DJ.1 Alias of B.1.1.529.5.1.25.1, found mainly in Peru, from pango-designation issue #1245
Expand Down Expand Up @@ -1266,7 +1266,7 @@ BA.5.2.21 Alias of B.1.1.529.5.2.21, mainly Indonesia, defined by C5284T on ORF1
CN.1 Alias of B.1.1.529.5.2.21.1, S:N450D, issue #1108
CN.2 Alias of B.1.1.529.5.2.21.2, S:R346T, S:Y28H, USA/Canada, from #1404
BA.5.2.22 Alias of B.1.1.529.5.2.22, mainly found in USA, Canada and Germany, from pango-designation issue #945
BA.5.2.23 Alias of B.1.1.529.5.2.23, mainly found in USA, from pango-designation issue #1090
BA.5.2.23 Alias of B.1.1.529.5.2.23, S:S255F, S:V445A, A4576T, T4579A, mainly found in USA, from pango-designation issue #1090
BA.5.2.24 Alias of B.1.1.529.5.2.24, defined by S:K444N on ORF1b:1050N branch
CK.1 Alias of B.1.1.529.5.2.24.1, Pakistan, defined by S:N460K, issue #1120
CK.1.1 Alias of B.1.1.529.5.2.24.1.1, found mainly in Japan, from pango-designation issue #1452
Expand Down Expand Up @@ -1423,7 +1423,7 @@ ET.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.35.1 found mainly in UK and Belgium, fro
BQ.1.1.36 Alias of B.1.1.529.5.3.1.1.1.1.1.1.36, Brazil, S:T883I
BQ.1.1.37 Alias of B.1.1.529.5.3.1.1.1.1.1.1.37 Italy, ins_S:247:SAE, S:Y248D, from #1571
BQ.1.1.38 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38 found mainly in South Africa and USA, from pango-designation issue #1419
EW.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.1 South Africa/Germany, S:478R From #1786
EW.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.1 South Africa/Germany, S:478R, T4579A, from #1786
EW.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.2 S:A701V
EW.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.3 S:A348S, South Africa
BQ.1.1.39 Alias of B.1.1.529.5.3.1.1.1.1.1.1.39 found mainly in England, Singapore and Canada, from pango-designation issue #1385
Expand Down Expand Up @@ -1474,7 +1474,7 @@ FC.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.72.1 S:478R, Indonesia
BQ.1.1.73 Alias of B.1.1.529.5.3.1.1.1.1.1.1.73, found mainly in Canada and Spain, from pango-designation issue #1740
BQ.1.1.74 Alias of B.1.1.529.5.3.1.1.1.1.1.1.74, S:182E, found mainly in Botswana and UK, from pango-designation issue #1817
FN.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.74.1, S:478R, Botswana/England, from #1817
BQ.1.1.75 Alias of B.1.1.529.5.3.1.1.1.1.1.1.75, S:K182N, S:F456L, Reunion
BQ.1.1.75 Alias of B.1.1.529.5.3.1.1.1.1.1.1.75, S:K182N, S:F456L(T22928C), Reunion
BQ.1.1.76 Alias of B.1.1.529.5.3.1.1.1.1.1.1.76, C15180T, Slovenia/Austria
BQ.1.1.77 Alias of B.1.1.529.5.3.1.1.1.1.1.1.77, C12853T, ORF1b:A1428V, USA/France
BQ.1.1.78 Alias of B.1.1.529.5.3.1.1.1.1.1.1.78, ORF1a:M315I, ORF1b:P1953L, Japan
Expand Down Expand Up @@ -2674,7 +2674,7 @@ XBB.1.5.1 USA, S:T573I
HJ.1 Alias of XBB.1.5.1.1, S:E324K, C4543T, USA
XBB.1.5.2 USA, S:T284I, S:K147I
XBB.1.5.3 USA, S:A411S
JK.1 Alias of XBB.1.5.3.1, S:K304Q, USA
JK.1 Alias of XBB.1.5.3.1, S:K304Q, USA, from #1798
XBB.1.5.4 USA, S:T883I directly on XBB.1.5 polytomy
XBB.1.5.5 USA, S:K1181I
XBB.1.5.6 USA, S:V952I
Expand Down Expand Up @@ -2753,7 +2753,7 @@ GR.1 Alias of XBB.1.5.42.1, S:445S, Vietnam From #1966
XBB.1.5.43 C18501T, Singapore/Malaysia/Indonesia
XBB.1.5.44 S:K356T, S:T572I, USA, from #1907
HC.1 Alias of XBB.1.5.44.1, S:P631S, USA, from sars-cov-2-variants/lineage-proposals#106
HC.2 Alias of XBB.1.5.44.2, S:F157L, Canada From sars-cov-2-variants/lineage-proposals#433
HC.2 Alias of XBB.1.5.44.2, S:F157L, Canada, from #2202
XBB.1.5.45 S:478R, C27425T, G28079T, India-GJ/MH, from #1792
XBB.1.5.46 C5770T, C15279T, Germany/France
GB.1 Alias of XBB.1.5.46.1, S:L518V, France, from #1969
Expand Down Expand Up @@ -2844,7 +2844,7 @@ HD.1.1 Alias of XBB.1.5.93.1.1, S:K356T, Dominican Republic From sars-cov-2-vari
XBB.1.5.94 S:Q613H, T25461C, France
XBB.1.5.95 ORF1a:A1851V
HS.1 Alias of XBB.1.5.95.1, S:478R, Mexico
HS.1.1 Alias of XBB.1.5.95.1.1, S:F456L, USA, from #2237
HS.1.1 Alias of XBB.1.5.95.1.1, S:F456L(T22928C), USA, from #2237
XBB.1.5.96 C28603T
XBB.1.5.97 S:T941S, C7834T, New Zealand/Australia
XBB.1.5.98 S:E554K, ORF8:V32L, Ghana
Expand All @@ -2855,9 +2855,9 @@ XBB.1.5.101 ORF7a:E3Q, C14877T, Scandinavia/Poland/Vietnam
XBB.1.5.102 C6896T, C14085T, C19488T, Brazil-Amazonas
JD.1 Alias of XBB.1.5.102.1, S:L455F, S:F456L (T22928C), A14634G, T28282C, Brazil, from #2071
JD.1.1 Alias of XBB.1.5.102.1.1, S:A475V, Brazil/USA/Spain From #2174
JD.1.2 Alias of XBB.1.5.102.1.2, S:P1162S, Brazil
JD.1.2 Alias of XBB.1.5.102.1.2, S:P1162S, Brazil, from sars-cov-2-variants/lineage-proposals#136
XBB.1.5.103 S:F456L (T22928C), S:180/184del, S:N185D, ORF1a:T1437I, ORF7b:C41W, T21357C, Argentina From #2192
XBB.1.5.104 S:K304Q, USA
XBB.1.5.104 S:K304Q, USA, from #1798
XBB.1.5.105 S:K304N, USA/Europe
XBB.1.6 USA, S:L216F, S:H146K, from issue #1428
XBB.1.7 USA-NY, S:V608I
Expand All @@ -2883,7 +2883,7 @@ FL.2.2.1 Alias of XBB.1.9.1.2.2.1, S:T307I, Indonesia, from #2027
FL.2.3 Alias of XBB.1.9.1.2.3, ORF1b:K1383R, China, from #2016
FL.2.3.1 Alias of XBB.1.9.1.2.3.1, S:K356T, China
FL.2.4 Alias of XBB.1.9.1.2.4, ORF8:S67F, China
FL.2.5 Alias of XBB.1.9.1.2.5, S:Q314E，from https://github.com/sars-cov-2-variants/lineage-proposals/issues/342
FL.2.5 Alias of XBB.1.9.1.2.5, S:Q314E，from sars-cov-2-variants/lineage-proposals#342
FL.2.6 Alias of XBB.1.9.1.2.6, S:N641K, from #2180
FL.3 Alias of XBB.1.9.1.3, T1753C, England
FL.3.1 Alias of XBB.1.9.1.3.1, ORF1a:T2264I, England
Expand All @@ -2899,9 +2899,9 @@ FL.4.4 Alias of XBB.1.9.1.4.4, ORF1a:T1542I, T24544C, S:478T (reversion), Indone
FL.4.5 Alias of XBB.1.9.1.4.5, ORF8:S67F, ORF1a:D1228G, C23635T, from #2018
FL.4.6 Alias of XBB.1.9.1.4.6, T5098C, C13965T, Australia/China
FL.4.7 Alias of XBB.1.9.1.4.7, S:L452R, Singapore, from sars-cov-2-variants/lineage-proposals#92
FL.4.8 Alias of XBB.1.9.1.4.8, S:478R, Indonesia
FL.4.9 Alias of XBB.1.9.1.4.9, S:S254P, ORF3a:D173G
FL.4.10 Alias of XBB.1.9.1.4.10, S:V1129I, China
FL.4.8 Alias of XBB.1.9.1.4.8, S:478R, Indonesia, from #2024
FL.4.9 Alias of XBB.1.9.1.4.9, S:S254P, ORF3a:D173G, from #2081
FL.4.10 Alias of XBB.1.9.1.4.10, S:V1129I, China, from #2087
FL.5 Alias of XBB.1.9.1.5, N:T362I
FL.5.1 Alias of XBB.1.9.1.5.1, S:M177T, from #2041
FL.6 Alias of XBB.1.9.1.6, ORF1a:I849V, Bahrain/Egypt/Oman/Austria
Expand All @@ -2910,7 +2910,7 @@ FL.8 Alias of XBB.1.9.1.8, ORF3a:I62F, Europe
FL.9 Alias of XBB.1.9.1.9, C23707T, T29691C, England
FL.10 Alias of XBB.1.9.1.10, ORF1a:C657Y
FL.10.1 Alias of XBB.1.9.1.10.1, S:E554K, C4234T, 220bp deletion in ORF8, South Korea, from #2040
FL.10.2 Alias of XBB.1.9.1.10.2, S:K356T, S:T523N, Canada/USA
FL.10.2 Alias of XBB.1.9.1.10.2, S:K356T, S:T523N, Canada/USA, from #2220
FL.11 Alias of XBB.1.9.1.11, ORF1a:L349F, France/French Guiana, from #1947
FL.12 Alias of XBB.1.9.1.12, ORF1a:C2210F
FL.13 Alias of XBB.1.9.1.13, G4354A
Expand All @@ -2931,9 +2931,9 @@ FL.19 Alias of XBB.1.9.1.19, T2377C, C17502T, T24505G, South Korea
FL.19.1 Alias of XBB.1.9.1.19.1, S:F456L (22928C), ORF1b:A1877V, Spain/Italy/Puerto Rico, from #2138
FL.20 Alias of XBB.1.9.1.20, S:F456L (22928C), S:Q52H, Spain, from #2072
FL.20.1 Alias of XBB.1.9.1.20.1, S:L455W, Northern Ireland/England, from #2145
FL.21 Alias of XBB.1.9.1.21, A10564T, South Korea/China
FL.21 Alias of XBB.1.9.1.21, A10564T
FL.21.1 Alias of XBB.1.9.1.21.1, S:D1084N, South Korea From #2143
FL.21.2 Alias of XBB.1.9.1.21.1, ORF1a:V1019F, ORF1a:I2873M, China From sars-cov-2-variants/lineage-proposals#187
FL.21.2 Alias of XBB.1.9.1.21.2, ORF1a:V1019F, ORF1a:I2873M, China From sars-cov-2-variants/lineage-proposals#187
FL.22 Alias of XBB.1.9.1.22, ORF1b:I1416V, T24184C
FL.23 Alias of XBB.1.9.1.23, ORF1b:V1132I, Philippines
FL.23.1 Alias of XBB.1.9.1.23.1, ORF1a:A2584V, C23185T, C8311T
Expand Down Expand Up @@ -2974,22 +2974,22 @@ EG.5.1.1 Alias of XBB.1.9.2.5.1.1, China, from pango-designation issue #2020
HK.1 Alias of XBB.1.9.2.5.1.1.1, S:G257V, China from https://github.com/sars-cov-2-variants/lineage-proposals/issues/359
HK.2 Alias of XBB.1.9.2.5.1.1.2, S:Q14H, China From sars-cov-2-variants/lineage-proposals#432
HK.3 Alias of XBB.1.9.2.5.1.1.3, S:L455F, China from https://github.com/sars-cov-2-variants/lineage-proposals/issues/414
HK.3.1 Alias of XBB.1.9.2.5.1.1.3.1, S:F157L, China From sars-cov-2-variants/lineage-proposals#580
HK.3.1 Alias of XBB.1.9.2.5.1.1.3.1, S:F157L, China, from #2193
HK.4 Alias of XBB.1.9.2.5.1.1.4, S:T883I, China
HK.5 Alias of XBB.1.9.2.5.1.1.5, S:Q677H, China
HK.6 Alias of XBB.1.9.2.5.1.1.6, S:D253G, ORF1a:A1923T, UK/USA
HK.6 Alias of XBB.1.9.2.5.1.1.6, S:D253G, ORF1a:A1923T, UK/USA, from #2184
HK.7 Alias of XBB.1.9.2.5.1.1.7, S:N148T, China
HK.8 Alias of XBB.1.9.2.5.1.1.8, S:L455F, on C11779T branch, China From #2230
HK.9 Alias of XBB.1.9.2.5.1.1.9, S:R190K, on C11779T branch, England From sars-cov-2-variants/lineage-proposals#564
HK.11 Alias of XBB.1.9.2.5.1.1.11, S:G184S, China/England/SouthKorea, from #2255
EG.5.1.2 Alias of XBB.1.9.2.5.1.2, Japan, ORF1b:V1644I From sars-cov-2-variants/lineage-proposals#301
EG.5.1.3 Alias of XBB.1.9.2.5.1.3, ORF1a:R542C, C22570T from https://github.com/sars-cov-2-variants/lineage-proposals/issues/222
JG.1 Alias of XBB.1.9.2.5.1.3.1, S:T732I, France From sars-cov-2-variants/lineage-proposals#519
JG.1 Alias of XBB.1.9.2.5.1.3.1, S:T732I, France, from #2218
JG.2 Alias of XBB.1.9.2.5.1.3.2, S:G75V, Europe, from #2249
EG.5.1.4 Alias of XBB.1.9.2.5.1.4, ORF1b:K2557R from https://github.com/cov-lineages/pango-designation/issues/2117
EG.5.1.4 Alias of XBB.1.9.2.5.1.4, ORF1b:K2557R, from #2117
JJ.1 Alias of XBB.1.9.2.5.1.4.1, S:L455F, ORF3a:I47V, China/Japan From #2208
EG.5.1.5 Alias of XBB.1.9.2.5.1.5, ORF1a:L3293I, ORF1b:T1274I, ORF1b:L2349V, Portugal
EG.5.1.6 Alias of XBB.1.9.2.5.1.6, S:F157L, ORF1a:S1857L, USA from https://github.com/sars-cov-2-variants/lineage-proposals/issues/394
EG.5.1.6 Alias of XBB.1.9.2.5.1.6, S:F157L, ORF1a:S1857L, USA, from sars-cov-2-variants/lineage-proposals#394
HV.1 Alias of XBB.1.9.2.5.1.6.1, S:L452R, USA
EG.5.1.7 Alias of XBB.1.9.2.5.1.7, S:K278N
EG.5.2 Alias of XBB.1.9.2.5.2, N:L161F
Expand All @@ -3004,7 +3004,7 @@ EG.9 Alias of XBB.1.9.2.9, S:403K, ORF1a:T1474I, ORF1b:N969S From sars-cov-2-var
EG.9.1 Alias of XBB.1.9.2.9.1, S:A344T, C13767T From sars-cov-2-variants/lineage-proposals#57
EG.10 Alias of XBB.1.9.2.10, S:A344T, S:R403K, Germany/Austria From sars-cov-2-variants/lineage-proposals#346
EG.10.1 Alias of XBB.1.9.2.10.1, S:S494P, S:A701V From sars-cov-2-variants/lineage-proposals#346
EG.11 Alias of XBB.1.9.2.11, S:E554K, A26319G, Malaysia，from https://github.com/sars-cov-2-variants/lineage-proposals/issues/523
EG.11 Alias of XBB.1.9.2.11, S:E554K, A26319G, Malaysia，from sars-cov-2-variants/lineage-proposals#523
EG.12 Alias of XBB.1.9.2.12, S:E554K, N:R195T, ORF1a:T4159I, Oman/Austria/Brunei/India
EG.13 Alias of XBB.1.9.2.13, ORF1a:K798N
XBB.1.9.3 ORF1b:G2005S, ORF1b:G1568C, Europe, from https://github.com/jmcbroome/auto-pango-designation/pull/193
Expand Down Expand Up @@ -3040,9 +3040,9 @@ FU.2 Alias of XBB.1.16.1.2, C8692T
FU.2.1 Alias of XBB.1.16.1.2.1, S:E619Q, Vietnam
FU.3 Alias of XBB.1.16.1.3, C11665T, India-RJ
FU.3.1 Alias of XBB.1.16.1.3.1, S:G184S
FU.4 Alias of XBB.1.16.1.4, S:Y453F, T29410C from #1832
FU.4 Alias of XBB.1.16.1.4, S:Y453F, T29410C, from #1832
FU.5 Alias of XBB.1.16.1.5, S:K97E, ORF1a:R542C, Bangladesh, from #2137
XBB.1.16.2 Defined by ORF3a:V13L, ORF1a:P926H, India From #1802
XBB.1.16.2 Defined by ORF3a:V13L, ORF1a:P926H, India, from #1802
GY.1 Alias of XBB.1.16.2.1, S:L84I, ORF1a:A4068S, China, from #2066
GY.2 Alias of XBB.1.16.2.2, S:T883I
GY.2.1 Alias of XBB.1.16.2.2.1, S:S255F, South Korea
Expand All @@ -3051,12 +3051,12 @@ GY.4 Alias of XBB.1.16.2.4, S:N450K, C29095T, Laos, from https://github.com/sars
GY.5 Alias of XBB.1.16.2.5, G9190C
GY.6 Alias of XBB.1.16.2.6, ORF1a:V1765I From sars-cov-2-variants/lineage-proposals/#308
GY.7 Alias of XBB.1.16.2.7, ORF1a:G3617C, G5515T, Thailand/Laos
GY.8 Alias of XBB.1.16.2.8, S:F456L, C25452T, Japan，from #2148
GY.8 Alias of XBB.1.16.2.8, S:F456L(T22928C), C25452T, Japan, from #2148
XBB.1.16.3 Defined by A2893C, India
XBB.1.16.4 Defined by S:T678I, India, from #1903
XBB.1.16.5 Defined by T9991C,C16332T, India, from #1983
XBB.1.16.6 S:F456L (T22930A), A12397G, USA/Canada/China
JF.1 Alias of XBB.1.16.6.1, S:L455F, USA From sars-cov-2-variants/lineage-proposals#531
JF.1 Alias of XBB.1.16.6.1, S:L455F, USA, from #2207
JF.2 Alias of XBB.1.16.6.2, S:Q675H, USA/Wales From sars-cov-2-variants/lineage-proposals#457
XBB.1.16.7 S:T732I after T12214C, Singapore/Japan/SouthKorea
XBB.1.16.8 S:T732I after C28531T, India/USA/China/Australia
Expand All @@ -3077,7 +3077,7 @@ XBB.1.16.19 ORF1b:V839I
XBB.1.16.20 ORF7b:S31L
XBB.1.16.21 ORF1a:V4072I
XBB.1.16.22 ORF3a:E242Q, from #1893
XBB.1.16.23 S:K304Q, India/USA/Japan/Singapore From sars-cov-2-variants/lineage-proposals#517
XBB.1.16.23 S:K304Q, India/USA/Japan/Singapore, from #2187
XBB.1.16.24 S:K182E, S:V551I, S:E554K, on A25410G branch, India, from #2223
XBB.1.17 Defined by T27995C and ORF1a:L469F, from issue #1712
XBB.1.17.1 Defined by S:215H, S:S486P, from issue #1712
Expand All @@ -3103,11 +3103,11 @@ FE.1.2 Alias of XBB.1.18.1.1.2, A5488G
XBB.1.19 Defined by S:486P, C541T, A10042G, T21363C, pre ORF8:8*, Pakistan, from #1680
XBB.1.19.1 Defined by S:E554K，Pakistan, from #1765
GW.1 Alias of XBB.1.19.1.1, ORF1a:D264N, N:M322V, China, from sars-cov-2-variants/lineage-proposals#157
GW.1.1 Alias of XBB.1.19.1.1.1, S:F456L, China/Japan/Singapore From sars-cov-2-variants/lineage-proposals#355
GW.1.1 Alias of XBB.1.19.1.1.1, S:F456L(T22928C), China/Japan/Singapore, from sars-cov-2-variants/lineage-proposals#355
GW.2 Alias of XBB.1.19.1.2, S:D936G, USA
GW.3 Alias of XBB.1.19.1.3, ORF1a:S100N, ORF1a:N3537S
GW.4 Alias of XBB.1.19.1.4, ORF1a:M3280I
GW.5 Alias of XBB.1.19.1.5, S:K478I, S:L455F, S:F456L, Pakistan From sars-cov-2-variants/lineage-proposals#61
GW.5 Alias of XBB.1.19.1.5, S:K478I, S:L455F, S:F456L(T22928C), Pakistan, from sars-cov-2-variants/lineage-proposals#61
XBB.1.19.2 Defined by S:P521S, Pakistan From sars-cov-2-variants/lineage-proposals#233
XBB.1.20 Defined by C541T, ORF3a:A72V, ORF1a:P4312T, pre ORF8:8*, Malaysia
XBB.1.21 Defined by S:486A, ORF1a:K1247R, Turkey, from #1646
Expand Down Expand Up @@ -3172,7 +3172,7 @@ XBB.1.40 S:Y453F, ORF1a:G519S, ORF1a:L2609F, ORF3a:P104S, Malaysia
XBB.1.41 S:L335S, S:R403K, S:486P, possibly common in Central/West Africa, from #1997
XBB.1.41.1 S:478R, France From sars-cov-2-variants/lineage-proposals#150
JC.1 Alias of XBB.1.41.1.1, S:K77R, Japan/Hawaii
XBB.1.41.2 S:S494P From sars-cov-2-variants/lineage-proposals#389
XBB.1.41.2 S:S494P, USA, from sars-cov-2-variants/lineage-proposals#389
XBB.1.42 S:486P, S:Q613H, on ORF1a:T4175I branch with XBB.1.9, Indonesia/Malaysia/China，from #1954
XBB.1.42.1 S:478R from https://github.com/sars-cov-2-variants/lineage-proposals/issues/198
XBB.1.42.2 C6040T, G9049A
Expand Down Expand Up @@ -3340,7 +3340,7 @@ XCF.1 S:F157L, USA, from sars-cov-2-variants/lineage-proposals#274
XCF.2 S:S929I, Canada
XCG Recombinant lineage of BA.5.2* and XBB.1, Mexico
XCH Recombinant lineage of GK.1.3 and XBB.1.9 (or XBB.1.16), GK.1.3 Spike with ORF9b:I5T from donor, from #2173
XCH.1 S:T573I
XCH.1 S:T573I, from #2173
XCJ Recombinant lineage of GM.2 with a little FP.1 (XBB.1.11.1.1) sandwich inserted in ORF1ab, from lineage-proposals#609
XCK Recombinant lineage of FL.1.5.1 (5' up to and including S:701) and BQ.1.2.2, from #2215
XCL Recombinant lineage of XBB (possibly XBB.1.5.68 or FY.4) from 5' up to 12468-15754, GK.2.1 onwards, Europe, from #2227
Expand Down

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