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Designate GJ.1.2.2 (XBB.2.3.3.1.2.2, S:478R, Europe/US/Australia) wit…
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…h 30 seqs

Note for @AngieHinrichs: This branch is wrongly included under GJ.1.2.1
on the current Usher tree due to a single sequence having dropout
at 450 (Australia/QLD0x01370F2023F/2023). A simple prune and replace
should fix it (especially if you don't include Australia at first)
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@corneliusroemer
corneliusroemer committed Sep 10, 2023
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2 comments on commit 18177cf

@FedeGueli
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https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_34d2a_e40110.json?label=id:node_7405380
So GJ.1.2.2 will have also Orf1a:G1152C and Orf9b:I5T as defining??

cc @ryhisner here the first catch of Orf9b:I5T by a fast XBB.2.3!

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Note for @AngieHinrichs: This branch is wrongly included under GJ.1.2.1 on the current Usher tree due to a single sequence having dropout at 450 (Australia/QLD0x01370F2023F/2023). A simple prune and replace should fix it (especially if you don't include Australia at first)

I thought a simple prune & replace would fix it too, but it's being stubborn because it shares JE.1's A22995G (S:K478R). I should be able to get it placed properly next round.

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