adding WHO labels

cov-lineages · Jun 3, 2021 · f64737f · f64737f
1 parent ac56ab5
commit f64737f
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Showing 10 changed files with 60 additions and 8 deletions.
diff --git a/constellations/definitions/cB.1.1.7.json b/constellations/definitions/cB.1.1.7.json
@@ -1,5 +1,5 @@
 {
-	"name": "B.1.1.7-like",
+	"name": "Alpha (B.1.1.7-like)",
 	"description": "B.1.1.7 lineage defining mutations",
 	"sources": [
 		"https://virological.org/t/563"

diff --git a/constellations/definitions/cB.1.351.json b/constellations/definitions/cB.1.351.json
@@ -1,5 +1,5 @@
 {
-    "label": "B.1.351-like",
+    "label": "Beta (B.1.351-like)",
 	"description": "Defining of lineage B.1.351",
 	"sources": [
 		"https://www.medrxiv.org/content/10.1101/2020.12.21.20248640v1"

diff --git a/constellations/definitions/cB.1.427_429.json b/constellations/definitions/cB.1.427_429.json
@@ -0,0 +1,27 @@
+{
+    "label": "Epsilon (B.1.427/429-like)",
+    "description": "",
+    "sources": [
+        null
+    ],
+    "type": "variant",
+    "variant": {
+        "Pango-lineages": [
+            "B.1.427",
+            "B.1.429"
+        ],
+        "WHO-label": "Epsilon",
+        "representative-genome": ""
+    },
+    "tags": [
+        "B.1.527",
+        "B.1.529",
+        "Eta"
+    ],
+    "sites": [
+    ],
+    "rules": {
+        "min_alt": 5,
+        "max_ref": 16
+    }
+}
diff --git a/constellations/definitions/cB.1.525.json b/constellations/definitions/cB.1.525.json
@@ -1,5 +1,5 @@
 {
-    "label": "B.1.525-like",
+    "label": "Eta (B.1.525-like)",
     "description": "This variant is a cluster of E484K containing genomes",
     "sources": [
         null

diff --git a/constellations/definitions/cB.1.526.json b/constellations/definitions/cB.1.526.json
@@ -0,0 +1,25 @@
+{
+    "label": "Iota (B.1.526-like)",
+    "description": "",
+    "sources": [
+        null
+    ],
+    "type": "variant",
+    "variant": {
+        "Pango-lineages": [
+            "B.1.526"
+        ],
+        "WHO-label": "Eta",
+        "representative-genome": ""
+    },
+    "tags": [
+        "B.1.526",
+        "Eta"
+    ],
+    "sites": [
+    ],
+    "rules": {
+        "min_alt": 5,
+        "max_ref": 16
+    }
+}
diff --git a/constellations/definitions/cB.1.617.2+K417N.json b/constellations/definitions/cB.1.617.2+K417N.json
@@ -1,5 +1,5 @@
 {
-    "label": "B.1.617.2-like+K417N",
+    "label": "Delta (B.1.617.2-like) +K417N",
     "description": "Defining constellation for lineage B.1.617.2 with the addition of spike K417N",
     "sources": [
         "https://github.com/cov-lineages/pango-designation/issues/49"

diff --git a/constellations/definitions/cB.1.617.2.json b/constellations/definitions/cB.1.617.2.json
@@ -1,5 +1,5 @@
 {
-    "label": "B.1.617.2-like",
+    "label": "Delta (B.1.617.2-like)",
     "description": "Defining constellation for lineage B.1.617.2",
     "sources": [
         "https://github.com/cov-lineages/pango-designation/issues/49"

diff --git a/constellations/definitions/cP.1.json b/constellations/definitions/cP.1.json
@@ -1,5 +1,5 @@
 {
-    "label": "P.1-like",
+    "label": "Gamma (P.1-like)",
     "description": "Defining constellation for lineage P.1",
     "sources": [
         "https://virological.org/t/586",

diff --git a/constellations/definitions/cP.2.json b/constellations/definitions/cP.2.json
@@ -1,5 +1,5 @@
 {
-    "label": "P.2-like",
+    "label": "Zeta (P.2-like)",
     "description": "Defining constellation for lineage P.2",
     "sources": [
         null

diff --git a/constellations/definitions/cP.3.json b/constellations/definitions/cP.3.json
@@ -1,5 +1,5 @@
 {
-    "label": "P.3-like",
+    "label": "Theta (P.3-like)",
     "description": "Defining constellation for lineage P.3",
     "sources": [
         "https://github.com/cov-lineages/pango-designation/issues/27",