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Merge pull request #21 from cov-lineages/dev
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,3 @@ | ||
| _program = "constellations" | ||
| __version__ = "v0.0.12" | ||
| __version__ = "v0.0.13" | ||
|
|
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,59 @@ | ||
| { | ||
| "label": "B.1.621-like", | ||
| "description": "", | ||
| "sources": [ | ||
| "https://github.com/cov-lineages/pango-designation/issues/57" | ||
| ], | ||
| "type": "variant", | ||
| "variant": { | ||
| "Pango_lineages": [ | ||
| "B.1.621" | ||
| ], | ||
| "mrca_lineage": "B.1.621", | ||
| "representative_genome": "" | ||
| }, | ||
| "tags": [ | ||
| "B.1.621" | ||
| ], | ||
| "sites": [ | ||
| "nuc:C3037T", | ||
| "ORF1a:T1055A", | ||
| "ORF1a:T1538I", | ||
| "nuc:C6037T", | ||
| "ORF1a:T3255I", | ||
| "ORF1a:Q3729R", | ||
| "nuc:A13057T", | ||
| "ORF1b:P314L", | ||
| "ORF1b:P1342S", | ||
| "nuc:C18877T", | ||
| "nuc:T19035C", | ||
| "nuc:C20148T", | ||
| "spike:T95I", | ||
| "spike:Y145N", | ||
| "spike:R346K", | ||
| "spike:E484K", | ||
| "spike:N501Y", | ||
| "spike:D614G", | ||
| "spike:P681H", | ||
| "spike:D950N", | ||
| "ORF3a:Q57H", | ||
| "nuc:A26492T", | ||
| "ORF8:T11K", | ||
| "ORF8:P38S", | ||
| "ORF8:S67F", | ||
| "nuc:A28272T", | ||
| "N:T205I" | ||
| ], | ||
| "intermediate": [ | ||
| "ins:21991+TAC:0.833333", | ||
| "del:26158:4:0.916667", | ||
| "nuc:C241T:0.916667", | ||
| "spike:Y144S:0.916667", | ||
| "ORF3a:L106F:0.916667", | ||
| "nuc:T28618A:0.916667" | ||
| ], | ||
| "rules": { | ||
| "min_alt": 19, | ||
| "max_ref": 3 | ||
| } | ||
| } |
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| { | ||
| "name": "furin-cleavage-site codons", | ||
| "prefix": "FCS_codons", | ||
| "description": "The furin cleavage site and its adjacent codons", | ||
| "sites": [ | ||
| "nuc:T23600", | ||
| "nuc:C23601", | ||
| "nuc:T23602", | ||
| "nuc:C23603", | ||
| "nuc:C23604", | ||
| "nuc:T23605", | ||
| "nuc:C23606", | ||
| "nuc:G23607", | ||
| "nuc:G23608", | ||
| "nuc:C23609", | ||
| "nuc:G23610", | ||
| "nuc:G23611", | ||
| "nuc:G23612", | ||
| "nuc:C23613", | ||
| "nuc:A23614", | ||
| "nuc:C23615", | ||
| "nuc:G23616", | ||
| "nuc:T23617", | ||
| "nuc:A23618", | ||
| "nuc:G23619", | ||
| "nuc:T23620" | ||
| ] | ||
| } |
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