Fix installation for Python 3.11

[israelmcmc]

I tracked down the issue it to pip resolving to a very old version of 3ML, which required a very old version of speclite, not compatible with recent Python versions.

I solved this simply by requiring a more recent version of 3ML, which is good anyway.

Closes #133

[Yong2Sheng]

Hi @israelmcmc. I tested the change, the installation was successfully (except installing h5py by conda install h5py). However, I got an error when importing things related to threeML：

It seems related to the logging of astromodels. Could you please test on your side? I never saw this before, and I am not sure if it's specific to my M1 mac.

Thank you!

from threeML import DiracDelta

---------------------------------------------------------------------------
ValueError                                Traceback (most recent call last)
Cell In[3], line 1
----> 1 from threeML import DiracDelta

File [~/conda_envs/cosipy_3_11/lib/python3.11/site-packages/threeML/__init__.py:24](http://localhost:8888/lab/tree/docs/tutorials/spectral_fits/continuum_fit/grb/~/conda_envs/cosipy_3_11/lib/python3.11/site-packages/threeML/__init__.py#line=23)
     20     pass
     22 from pathlib import Path
---> 24 from threeML.io.logging import setup_logger
     26 # Import everything from astromodels
     27 from astromodels import *

File [~/conda_envs/cosipy_3_11/lib/python3.11/site-packages/threeML/io/__init__.py:1](http://localhost:8888/lab/tree/docs/tutorials/spectral_fits/continuum_fit/grb/~/conda_envs/cosipy_3_11/lib/python3.11/site-packages/threeML/io/__init__.py#line=0)
----> 1 from .logging import (activate_logs, activate_progress_bars, activate_warnings,
      2                       debug_mode, loud_mode, quiet_mode, setup_logger,
      3                       silence_logs, silence_progress_bars, silence_warnings,
      4                       toggle_progress_bars, update_logging_level)
      5 from .plotting.get_style import get_threeML_style, set_threeML_style

File [~/conda_envs/cosipy_3_11/lib/python3.11/site-packages/threeML/io/logging.py:7](http://localhost:8888/lab/tree/docs/tutorials/spectral_fits/continuum_fit/grb/~/conda_envs/cosipy_3_11/lib/python3.11/site-packages/threeML/io/logging.py#line=6)
      4 from contextlib import contextmanager
      5 from pathlib import Path
----> 7 from astromodels import astromodels_config
      8 from astromodels.utils.logging import (
      9     LogFilter,
     10     _console_formatter,
   (...)
     15     astromodels_usr_log_handler,
     16 )
     18 from astromodels.utils.valid_variable import is_valid_variable_name

File [~/conda_envs/cosipy_3_11/lib/python3.11/site-packages/astromodels/__init__.py:14](http://localhost:8888/lab/tree/docs/tutorials/spectral_fits/continuum_fit/grb/~/conda_envs/cosipy_3_11/lib/python3.11/site-packages/astromodels/__init__.py#line=13)
      7 # Import the version
      8 
      9 #
     10 #
     12 if os.environ.get("ASTROMODELS_DEBUG", None) is None:
---> 14     from .utils.configuration import astromodels_config
     15     from .core.memoization import use_astromodels_memoization
     16     from .core.model import Model

File [~/conda_envs/cosipy_3_11/lib/python3.11/site-packages/astromodels/utils/configuration.py:5](http://localhost:8888/lab/tree/docs/tutorials/spectral_fits/continuum_fit/grb/~/conda_envs/cosipy_3_11/lib/python3.11/site-packages/astromodels/utils/configuration.py#line=4)
      1 from omegaconf import OmegaConf
      3 from astromodels.utils import get_path_of_user_config
----> 5 from .config_structure import Config
      7 # Read the default Config
      8 astromodels_config: Config = OmegaConf.structured(Config)

File [~/conda_envs/cosipy_3_11/lib/python3.11/site-packages/astromodels/utils/config_structure.py:69](http://localhost:8888/lab/tree/docs/tutorials/spectral_fits/continuum_fit/grb/~/conda_envs/cosipy_3_11/lib/python3.11/site-packages/astromodels/utils/config_structure.py#line=68)
     63     use_parameter_transforms: bool = True
     64     ignore_parameter_bounds: bool = False
---> 69 @dataclass
     70 class Config:
     71     logging: Logging = Logging()
     72     absorption_models: AbsorptionModels = AbsorptionModels()

File [~/conda_envs/cosipy_3_11/lib/python3.11/dataclasses.py:1232](http://localhost:8888/lab/tree/docs/tutorials/spectral_fits/continuum_fit/grb/~/conda_envs/cosipy_3_11/lib/python3.11/dataclasses.py#line=1231), in dataclass(cls, init, repr, eq, order, unsafe_hash, frozen, match_args, kw_only, slots, weakref_slot)
   1229     return wrap
   1231 # We're called as @dataclass without parens.
-> 1232 return wrap(cls)

File [~/conda_envs/cosipy_3_11/lib/python3.11/dataclasses.py:1222](http://localhost:8888/lab/tree/docs/tutorials/spectral_fits/continuum_fit/grb/~/conda_envs/cosipy_3_11/lib/python3.11/dataclasses.py#line=1221), in dataclass.<locals>.wrap(cls)
   1221 def wrap(cls):
-> 1222     return _process_class(cls, init, repr, eq, order, unsafe_hash,
   1223                           frozen, match_args, kw_only, slots,
   1224                           weakref_slot)

File [~/conda_envs/cosipy_3_11/lib/python3.11/dataclasses.py:958](http://localhost:8888/lab/tree/docs/tutorials/spectral_fits/continuum_fit/grb/~/conda_envs/cosipy_3_11/lib/python3.11/dataclasses.py#line=957), in _process_class(cls, init, repr, eq, order, unsafe_hash, frozen, match_args, kw_only, slots, weakref_slot)
    955         kw_only = True
    956     else:
    957         # Otherwise it's a field of some type.
--> 958         cls_fields.append(_get_field(cls, name, type, kw_only))
    960 for f in cls_fields:
    961     fields[f.name] = f

File [~/conda_envs/cosipy_3_11/lib/python3.11/dataclasses.py:815](http://localhost:8888/lab/tree/docs/tutorials/spectral_fits/continuum_fit/grb/~/conda_envs/cosipy_3_11/lib/python3.11/dataclasses.py#line=814), in _get_field(cls, a_name, a_type, default_kw_only)
    811 # For real fields, disallow mutable defaults.  Use unhashable as a proxy
    812 # indicator for mutability.  Read the __hash__ attribute from the class,
    813 # not the instance.
    814 if f._field_type is _FIELD and f.default.__class__.__hash__ is None:
--> 815     raise ValueError(f'mutable default {type(f.default)} for field '
    816                      f'{f.name} is not allowed: use default_factory')
    818 return f

ValueError: mutable default <class 'astromodels.utils.config_structure.Logging'> for field logging is not allowed: use default_factory

[israelmcmc]

Thanks for checking this, @Yong2Sheng. I confirm that I can reproduce your error. I'll need to poke into this to find out what's causing it.

[israelmcmc]

Related to threeML/astromodels#201

[israelmcmc]

@Yong2Sheng Can you give it another try, please? I'm now requiring a newer version of astromodels that fixes this issue.

[Yong2Sheng]

Hi @israelmcmc, I installed the package and successfully run through the TS map notebook, it went well. Thank you!

[Yong2Sheng]

Installed, tested the imports and ts map notebook. It went well. Thank you @israelmcmc!

[Yong2Sheng]

Approve.