BUG:merge: Fix merging masked & scaled data #1241
Workflow file for this run
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| name: Tests | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| schedule: | |
| - cron: '0 0 * * 0' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| PIP_NO_BINARY: rasterio | |
| DEBIAN_FRONTEND: noninteractive | |
| jobs: | |
| linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| - uses: pre-commit/[email protected] | |
| docker_tests: | |
| needs: linting | |
| runs-on: ubuntu-latest | |
| name: Docker | GDAL=${{ matrix.gdal-version }} | python=${{ matrix.python-version }} | rasterio${{ matrix.rasterio-version }} | scipy ${{ matrix.run-with-scipy }} | |
| container: ghcr.io/osgeo/gdal:ubuntu-full-${{ matrix.gdal-version }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.10', '3.11', '3.12'] | |
| rasterio-version: [''] | |
| xarray-version: [''] | |
| numpy-version: [''] | |
| run-with-scipy: ['YES'] | |
| gdal-version: ['3.8.2'] | |
| include: | |
| - python-version: '3.10' | |
| rasterio-version: '' | |
| xarray-version: '==2024.7.0' | |
| numpy-version: '<2' | |
| run-with-scipy: 'YES' | |
| gdal-version: '3.6.4' | |
| - python-version: '3.10' | |
| rasterio-version: '' | |
| xarray-version: '' | |
| numpy-version: '' | |
| run-with-scipy: 'NO' | |
| gdal-version: '3.7.3' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Update | |
| run: | | |
| rm /etc/apt/sources.list.d/apache-arrow.sources | |
| apt-get update | |
| apt-get -y install software-properties-common | |
| add-apt-repository -y ppa:deadsnakes/ppa | |
| apt-get update | |
| - name: Set up Python ${{ matrix.python-version }} | |
| run: | | |
| apt-get install -y --no-install-recommends \ | |
| python${{ matrix.python-version }} \ | |
| python${{ matrix.python-version }}-dev \ | |
| python${{ matrix.python-version }}-venv \ | |
| python3-pip \ | |
| g++ \ | |
| git | |
| chown -R $(whoami) /github/home/ | |
| - name: Install dependencies | |
| run: | | |
| python${{ matrix.python-version }} -m venv testenv | |
| . testenv/bin/activate | |
| python -m pip install --upgrade pip | |
| export INSTALL_DEPS='rasterio${{ matrix.rasterio-version }} xarray${{ matrix.xarray-version }} numpy${{ matrix.numpy-version }}' | |
| [ "${{ matrix.run-with-scipy }}" = "YES" ] && export INSTALL_DEPS="${INSTALL_DEPS} scipy" | |
| python -m pip install $INSTALL_DEPS | |
| python -m pip install -e .[all] | |
| python -m pip install -r requirements/test.txt | |
| - name: run tests | |
| run: | | |
| . testenv/bin/activate | |
| python -m pytest --cov-report term-missing --cov=rioxarray --cov-report xml | |
| - uses: codecov/codecov-action@v4 | |
| conda_test: | |
| needs: linting | |
| name: ${{ matrix.os }} | ${{ matrix.python-version }} | rasterio-${{ matrix.rasterio-version }} | scipy ${{ matrix.run-with-scipy }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: [ubuntu-latest, macos-13, windows-latest] | |
| python-version: ['3.10', '3.11', '3.12'] | |
| rasterio-version: ['*'] | |
| xarray-version: ['*'] | |
| run-with-scipy: ['YES'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Conda | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| # https://github.com/mamba-org/setup-micromamba/issues/225 | |
| micromamba-version: 1.5.10-0 | |
| init-shell: bash | |
| environment-name: test | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| rasterio=${{ matrix.rasterio-version }} | |
| xarray=${{ matrix.xarray-version }} | |
| libgdal-netcdf | |
| libgdal-hdf4 | |
| libgdal-hdf5 | |
| pyproj | |
| netcdf4 | |
| dask | |
| pandoc | |
| - name: Install Env | |
| shell: bash | |
| run: | | |
| [ "${{ matrix.run-with-scipy }}" = "YES" ] && micromamba install -n test scipy | |
| micromamba run -n test python -m pip install -e .[all] | |
| micromamba run -n test python -m pip install -r requirements/dev.txt | |
| - name: Check and Log Environment | |
| shell: bash | |
| run: | | |
| micromamba run -n test python -V | |
| micromamba run -n test python -c "import rioxarray; rioxarray.show_versions();" | |
| micromamba info | |
| - name: pylint | |
| if: matrix.python-version == '3.10' | |
| shell: bash | |
| run: | | |
| micromamba run -n test pylint rioxarray/ | |
| - name: mypy | |
| shell: bash | |
| if: matrix.python-version == '3.10' | |
| run: | | |
| micromamba run -n test mypy rioxarray/ | |
| - name: Test | |
| shell: bash | |
| run: | | |
| micromamba run -n test pytest --cov-report term-missing --cov=rioxarray --cov-report xml | |
| - name: Test Build docs | |
| shell: bash | |
| if: contains(matrix.os, 'ubuntu') | |
| run: | | |
| micromamba run -n test sphinx-build -b html docs/ docs/_build/ | |
| - uses: codecov/codecov-action@v4 | |
| test_latest: | |
| needs: linting | |
| name: Test latest dependencies | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Conda | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| # https://github.com/mamba-org/setup-micromamba/issues/225 | |
| micromamba-version: 1.5.10-0 | |
| init-shell: bash | |
| environment-name: test | |
| create-args: >- | |
| python=3.10 | |
| proj | |
| libgdal-core | |
| libgdal-netcdf | |
| libgdal-hdf4 | |
| libgdal-hdf5 | |
| cython | |
| netcdf4 | |
| - name: Install Env | |
| shell: bash | |
| run: | | |
| micromamba run -n test python -m pip install \ | |
| --index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple \ | |
| --no-deps --pre --upgrade \ | |
| numpy \ | |
| pandas \ | |
| scipy; | |
| micromamba run -n test python -m pip install --upgrade \ | |
| git+https://github.com/dask/dask.git@main \ | |
| git+https://github.com/dask/distributed.git@main \ | |
| git+https://github.com/mapbox/rasterio.git@main \ | |
| git+https://github.com/pyproj4/pyproj.git@main \ | |
| git+https://github.com/pydata/xarray.git@main; | |
| micromamba run -n test python -m pip install -e .[all] | |
| micromamba run -n test python -m pip install -r requirements/test.txt | |
| - name: Check and Log Environment | |
| shell: bash | |
| run: | | |
| micromamba run -n test python -V | |
| micromamba run -n test python -c "import rioxarray; rioxarray.show_versions();" | |
| micromamba info | |
| - name: Test | |
| shell: bash | |
| run: | | |
| micromamba run -n test pytest --cov-report term-missing --cov=rioxarray --cov-report xml |