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vtk is not compatible with libexpat 2.6 #682

Merged
merged 1 commit into from
Mar 15, 2024
Merged

vtk is not compatible with libexpat 2.6 #682

merged 1 commit into from
Mar 15, 2024

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minrk
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@minrk minrk commented Mar 14, 2024

Checklist

  • Used a static YAML file for the patch if possible (instructions).
  • Ran pre-commit run -a and ensured all files pass the linting checks.
  • Ran python show_diff.py and posted the output as part of the PR.
  • Modifications won't affect packages built in the future.

PR to fix future builds: conda-forge/vtk-feedstock#321
upstream issue: https://gitlab.kitware.com/vtk/vtk/-/issues/19258

show_diff.py 
================================================================================
================================================================================
linux-armv7l
================================================================================
================================================================================
win-32
================================================================================
================================================================================
osx-arm64
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_220.conda
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_209.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_213.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_209.conda
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_214.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_215.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_210.conda
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_208.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_214.conda
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_206.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_204.conda
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_211.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_205.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_214.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_214.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_216.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_219.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_205.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_218.conda
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_212.conda
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_203.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_203.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_203.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_211.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_210.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_218.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_216.conda
osx-arm64::vtk-base-9.2.6-qt_py312h1234567_220.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_207.conda
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_204.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_207.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_206.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_217.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_215.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_218.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_206.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_207.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_210.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_209.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_211.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_220.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_208.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_208.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_205.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_206.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_211.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_216.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_217.conda
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_219.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_212.conda
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_213.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_203.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_212.conda
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_205.conda
osx-arm64::vtk-base-9.2.6-qt_py312h1234567_219.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_213.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_219.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_204.conda
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_218.conda
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_217.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_220.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_213.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_204.conda
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_215.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_215.conda
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_210.conda
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_216.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_217.conda
osx-arm64::vtk-base-9.2.6-qt_py312h1234567_218.conda
osx-arm64::vtk-base-9.2.6-qt_py311h1234567_207.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_209.conda
osx-arm64::vtk-base-9.2.6-qt_py39h1234567_208.conda
osx-arm64::vtk-base-9.2.6-qt_py310h1234567_212.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_219.conda
osx-arm64::vtk-base-9.2.6-qt_py38h1234567_220.conda
-    "libexpat >=2.5.0,<3.0a0",
+    "libexpat >=2.5.0,<2.6.0a0",
================================================================================
================================================================================
linux-ppc64le
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_214.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_215.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_204.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_203.conda
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_209.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_204.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_203.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_215.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_204.conda
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_207.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_211.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_216.conda
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_204.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_208.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_214.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_205.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_208.conda
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_219.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_211.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_208.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_219.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_214.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_203.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_216.conda
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_211.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_212.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_211.conda
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_220.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_220.conda
linux-ppc64le::vtk-base-9.2.6-qt_py312h1234567_220.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_219.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_213.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_210.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_217.conda
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_210.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_213.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_218.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_209.conda
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_218.conda
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_213.conda
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_208.conda
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_203.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_218.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_207.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_212.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_213.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_216.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_206.conda
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_215.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_218.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_210.conda
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_216.conda
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_217.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_217.conda
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_212.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_209.conda
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_205.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_220.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_219.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_217.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_206.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_207.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_205.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_206.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_215.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_207.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_220.conda
linux-ppc64le::vtk-base-9.2.6-qt_py38h1234567_206.conda
linux-ppc64le::vtk-base-9.2.6-qt_py311h1234567_209.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_212.conda
linux-ppc64le::vtk-base-9.2.6-qt_py312h1234567_218.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_205.conda
linux-ppc64le::vtk-base-9.2.6-qt_py310h1234567_210.conda
linux-ppc64le::vtk-base-9.2.6-qt_py312h1234567_219.conda
linux-ppc64le::vtk-base-9.2.6-qt_py39h1234567_214.conda
-    "libexpat >=2.5.0,<3.0a0",
+    "libexpat >=2.5.0,<2.6.0a0",
================================================================================
================================================================================
linux-aarch64
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_207.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_207.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_213.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_205.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_206.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_217.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_205.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_219.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_207.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_207.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_215.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_206.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_204.conda
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_205.conda
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_218.conda
linux-aarch64::vtk-base-9.2.6-qt_py312h1234567_219.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_219.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_216.conda
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_204.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_203.conda
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_206.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_214.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_203.conda
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_209.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_218.conda
linux-aarch64::vtk-base-9.2.6-qt_py312h1234567_220.conda
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_220.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_208.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_217.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_220.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_213.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_205.conda
linux-aarch64::vtk-base-9.2.6-qt_py312h1234567_218.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_212.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_218.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_209.conda
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_203.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_218.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_212.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_204.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_214.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_210.conda
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_216.conda
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_217.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_211.conda
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_213.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_204.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_217.conda
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_208.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_219.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_213.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_220.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_214.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_203.conda
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_214.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_212.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_206.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_208.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_211.conda
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_215.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_210.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_211.conda
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_211.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_209.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_216.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_215.conda
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_212.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_209.conda
linux-aarch64::vtk-base-9.2.6-qt_py38h1234567_210.conda
linux-aarch64::vtk-base-9.2.6-qt_py39h1234567_220.conda
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_210.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_215.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_216.conda
linux-aarch64::vtk-base-9.2.6-qt_py310h1234567_219.conda
linux-aarch64::vtk-base-9.2.6-qt_py311h1234567_208.conda
-    "libexpat >=2.5.0,<3.0a0",
+    "libexpat >=2.5.0,<2.6.0a0",
================================================================================
================================================================================
noarch
================================================================================
================================================================================
win-64
win-64::vtk-base-9.2.6-qt_py38h1234567_214.conda
win-64::vtk-base-9.2.6-qt_py38h1234567_208.conda
win-64::vtk-base-9.2.6-qt_py311h1234567_207.conda
win-64::vtk-base-9.2.6-qt_py39h1234567_206.conda
win-64::vtk-base-9.2.6-qt_py310h1234567_220.conda
win-64::vtk-base-9.2.6-qt_py311h1234567_205.conda
win-64::vtk-base-9.2.6-qt_py311h1234567_218.conda
win-64::vtk-base-9.2.6-qt_py310h1234567_208.conda
win-64::vtk-base-9.2.6-qt_py310h1234567_207.conda
win-64::vtk-base-9.2.6-qt_py310h1234567_213.conda
win-64::vtk-base-9.2.6-qt_py311h1234567_214.conda
win-64::vtk-base-9.2.6-qt_py311h1234567_209.conda
win-64::vtk-base-9.2.6-qt_py310h1234567_214.conda
win-64::vtk-base-9.2.6-qt_py311h1234567_217.conda
win-64::vtk-base-9.2.6-qt_py38h1234567_210.conda
win-64::vtk-base-9.2.6-qt_py311h1234567_219.conda
win-64::vtk-base-9.2.6-qt_py38h1234567_207.conda
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================================================================================
================================================================================
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================================================================================
================================================================================
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-    "libexpat >=2.5.0,<3.0a0",
+    "libexpat >=2.5.0,<2.6.0a0",

@minrk minrk requested a review from a team as a code owner March 14, 2024 08:42
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Hi! This is the friendly automated conda-forge-linting service.

I just wanted to let you know that I linted all conda-recipes in your PR (recipe) and found it was in an excellent condition.

@minrk minrk mentioned this pull request Mar 14, 2024
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@Tobias-Fischer
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Wouldn’t it be better to instead change the pin for expat in general?

@hmaarrfk
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It seems that VTK is using a quirk in libexpat. The upstream issue referenced the thinking of some devs.

I think we should take a wait and see approach for a bit before changing the entire pin at conda-forge

@minrk minrk mentioned this pull request Mar 15, 2024
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minrk commented Mar 15, 2024

This PR is only correcting the metadata for already published builds, which are currently installing broken vtk since the libexpat release last week.

My understanding of the upstream issue is that it's not an ABI issue with libexpat (i.e. conda-forge expat run_exports is not wrong and shouldn't be patched), but an incorrect assumption in vtk in particular.

Updating global expat pinning is done in conda-forge/conda-forge-pinning-feedstock#5640 , but that only affects the version used in builds, not runtime pinning, so this PR and conda-forge/vtk-feedstock#321 are both still required to address the problem.

So there are two issues, fixed in 3 PRs:

The only one of those I see as optional is updating the global pinning. Updating the global pinning doesn't fix the runtime compatibility pinning of current or future vtk builds. Updating run_exports in expat would, but I don't think that's right because it's not an ABI issue.

@hmaarrfk hmaarrfk merged commit 633bbaf into conda-forge:main Mar 15, 2024
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@minrk minrk deleted the vtk-expat-26 branch March 15, 2024 13:10
@traversaro traversaro mentioned this pull request Mar 16, 2024
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3 participants
@minrk @Tobias-Fischer @hmaarrfk