CoRSIV-Capture-ManifestV3.0.0.txt

# Author: Chathura J. Gunasekara
# Date: 07/10/2020
# Email: gunaseka@bcm.edu

# Target definition upload template file.
#
# The file must conform to the following format:
# - File extension must be .txt.
# - Must contain one row for each target.
# - Targets may be identified by gene symbol, accession, or chromosomal coordinates, either browser or BED format
# - Comments may be inserted anywhere in the file.

# Group ID
GO:0005310
GO:0016032

# RefSeq 
SMAD4
NM_005359

# Ensembl
SMAD4
ENST00000342988

# CCDS
SMAD4
CCDS11950

# VEGA
SMAD4
OTTHUMT00000255993

# GENCODE
SMAD4
ENST00000342988

# Example genomic coordinate in browser format
# - Intervals are one-based, closed.
# - A target ID may be provided in a second column (tab- or space-delimited).
# - A multiple-region target may be entered by repeating the target ID
chr18:48573407-48573675	MyGene1
chr18:48575046-48575240	MyGene1
chr18:48575655-48575704	MyGene1
chr18:48577714-48577795	MyGene1
chr18:48578995-48579032	MyGene1
chr18:48581141-48581373	MyGene1
chr18:48584485-48584624	MyGene1
chr18:48584700-48584836	MyGene1
chr18:48586226-48586296	MyGene1
chr18:48591783-48591986	MyGene1
chr18:48593379-48593567	MyGene1
chr18:48602998-48603156	MyGene1
chr18:48604616-48604847	MyGene1

# Example genomic coordinate in BED format
# - Intervals are zero-based, half open.
# - A target ID may be provided in a fourth column (tab- or space-delimited).
# - A multiple-region target may be entered by repeating the target ID
chr18	48573406	48573675	MyGene2
chr18	48575045	48575240	MyGene2
chr18	48575654	48575704	MyGene2
chr18	48577713	48577795	MyGene2
chr18	48578994	48579032	MyGene2
chr18	48581140	48581373	MyGene2
chr18	48584484	48584624	MyGene2
chr18	48584699	48584836	MyGene2
chr18	48586225	48586296	MyGene2
chr18	48591782	48591986	MyGene2
chr18	48593378	48593567	MyGene2
chr18	48602997	48603156	MyGene2
chr18	48604615	48604847	MyGene2

# Example cytoband 
7p22.1