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@computational-epigenetics-section

Waterland Lab Computational Epigenetics

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  1. SNP_calling SNP_calling Public

    SNP calling pipline

    Jupyter Notebook 2

  2. bisulfite-seq-data-analysis-pipeline bisulfite-seq-data-analysis-pipeline Public

    This repo contains details of Bisulfite Processing Pipeline

    HTML 1 1

  3. CpGMatrixPlotter CpGMatrixPlotter Public

    package to plot CpG matrix data as circles spaces proportionally apart

    Jupyter Notebook 1 1

  4. Journal_club_notes Journal_club_notes Public

    Questions and Clarifications addressed during the Journal Club meetings will be updated here. Please create a directory for paper discussed in the Journal Club

  5. BS_Capture_analysis BS_Capture_analysis Public

    Preprocessing for high resolution quality assesment

    Jupyter Notebook

  6. SplitByChromosome SplitByChromosome Public

    Python wrapper for samtools which will split a BAM file into standard chromosomes in parallel

    Python

Repositories

Showing 10 of 14 repositories
  • CoRSIV-Illumina-Overlap Public

    Deposits the results showing how different platforms of Illumina probes (HM450, EPIC, MSA) overlap with different versions of CoRSIV-like regions (ESS, SIV, CoRSIVs).

    computational-epigenetics-section/CoRSIV-Illumina-Overlap’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 27, 2024
  • https_share Public

    USCS Visualization

    computational-epigenetics-section/https_share’s past year of commit activity
    0 0 0 0 Updated Jul 7, 2023
  • bisulfite-seq-data-analysis-pipeline Public

    This repo contains details of Bisulfite Processing Pipeline

    computational-epigenetics-section/bisulfite-seq-data-analysis-pipeline’s past year of commit activity
    HTML 1 GPL-3.0 1 0 0 Updated May 19, 2022
  • CoRSIV-Capture-Design Public
    computational-epigenetics-section/CoRSIV-Capture-Design’s past year of commit activity
    0 0 0 0 Updated Aug 18, 2020
  • gbrowser_files Public
    computational-epigenetics-section/gbrowser_files’s past year of commit activity
    0 0 0 0 Updated Feb 12, 2020
  • CpGMatrixPlotter Public

    package to plot CpG matrix data as circles spaces proportionally apart

    computational-epigenetics-section/CpGMatrixPlotter’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Oct 28, 2019
  • MCCS_ESS_Cancer Public

    Exploratory analysis of MCCS Cancer Cohort with ESS-SIV probes

    computational-epigenetics-section/MCCS_ESS_Cancer’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 12, 2019
  • LingyinLabNoteBook Public
    computational-epigenetics-section/LingyinLabNoteBook’s past year of commit activity
    R 0 0 0 0 Updated Oct 29, 2018
  • CX-Bin Public

    Used to filter and bin data generated by the bismark_methylation_extractor when running with the -CX flag

    computational-epigenetics-section/CX-Bin’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 1, 2017
  • M-bias-plotting Public

    Takes M-bias report files from bismark methylation extractor and generates plots

    computational-epigenetics-section/M-bias-plotting’s past year of commit activity
    Python 0 0 0 0 Updated Oct 18, 2017
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