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Start preparations for doc #80

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merged 9 commits into from
Jul 21, 2023
Merged

Start preparations for doc #80

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e7811ce
Start preparations for doc
constantinpape Jul 20, 2023
ebad230
Add stub for starting page
constantinpape Jul 20, 2023
bae896e
Add type annotations and doc strings for instance_segmentation
constantinpape Jul 20, 2023
3aac00d
Add doc strings and type annotation to prompt_based_segmentation
constantinpape Jul 20, 2023
f2b20e0
Add doc strings and type annotations for prompt_generators
constantinpape Jul 21, 2023
7c736f6
Add doc strings and type annotations for util
constantinpape Jul 21, 2023
6c3b25c
Add doc strings and type annotations for visualization
constantinpape Jul 21, 2023
06bdcbe
Fix naming of get_centers_and_bounding_boxes; update corresponding test
constantinpape Jul 21, 2023
5d6af10
Fix typo
constantinpape Jul 21, 2023
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7 changes: 7 additions & 0 deletions doc/start_page.md
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# Segment Anything for Microscopy

Segment Anything for Microscopy implements automatic and interactive annotation for microscopy data. It is built on top of [Segment Anything](https://segment-anything.com/) by Meta AI and specializes it for microscopy and other bio-imaging data.
Its core components are:
- The `micro_sam` tool: implements interactive data annotation using [napari](https://napari.org/stable/).
- The `micro_sam` python library: implements functionality for applying Segment Anything to multi-dimensional data, and to fine-tune it on custom datasets.
- The `micro_sam` models: new Segment Anything models that were fine-tuned on publicly available microscopy data.
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