Changes for new release #327
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Keep master and dev in sync
…ta downloads) (#277) Add napari settings widget
Add CI for windows and mac --------- Co-authored-by: Constantin Pape <[email protected]>
Improve device handling to support torch.device as well as string
Add tests for get_sam_model and iterative prediction.
Use pooch to download model weights and simplify some other functionality --------- Co-authored-by: Constantin Pape <[email protected]> Co-authored-by: Constantin Pape <[email protected]>
Implement identity transform and input check for SAM training --------- Co-authored-by: Constantin Pape <[email protected]>
Implement joint training for interactive and automatic instance segmentation
…specialist Update LiveCELL Specialist Fine-tuning
Update livecell evaluation experiments
Update livecell evaluation experiments
…e-seg New instance segmentation
Fix input resizing for prompts in training
Simplify interactive training and implement box distortion
Make grid search more flexible to enable external re-use
Update training for LM datasets
Update LM Generalist experiments
Implement EM organelle model training
* Update train_mito_nuc_em_generalist.py * Update obtain_mito_nuc_em_datasets.py
Add fine-tuning for EM boundary generalist model
Minor updates in finetuning scripts.
* Update livecell inference
* Add livecell specialist results
* Add livecell results from lm generalists
* Fix evaluation script * Update precomputing embeddings for val + other minor fixes
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