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@comprna

Computational RNA Biology group

Computational RNA Biology group

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  1. riser riser Public

    Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing

    Python 11 4

  2. CHEUI CHEUI Public

    Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing

    C++ 33 2

  3. R2Dtool R2Dtool Public

    Analyse RNA feature distributions.

    Jupyter Notebook 14 4

  4. RATTLE RATTLE Public

    Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

    C++ 57 10

  5. SUPPA SUPPA Public

    SUPPA: Fast quantification of splicing and differential splicing

    Python 262 62

  6. METEORE METEORE Public

    Automatic DNA methylation detection from nanopore tools and their consensus model

    R 72 18

Repositories

Showing 10 of 31 repositories
  • R2Dtool Public

    Analyse RNA feature distributions.

    comprna/R2Dtool’s past year of commit activity
    Jupyter Notebook 14 MIT 4 0 0 Updated Nov 8, 2024
  • riser Public

    Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing

    comprna/riser’s past year of commit activity
    Python 11 GPL-3.0 4 0 0 Updated Oct 2, 2024
  • CHEUI Public

    Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing

    comprna/CHEUI’s past year of commit activity
    C++ 33 2 1 0 Updated Jul 19, 2024
  • comprna/SVM-BPfinder-3M’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Jul 2, 2024
  • comprna/SVM-BPfinder’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Jul 2, 2024
  • SUPPA Public

    SUPPA: Fast quantification of splicing and differential splicing

    comprna/SUPPA’s past year of commit activity
    Python 262 MIT 62 38 1 Updated Jun 19, 2024
  • RATTLE Public

    Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

    comprna/RATTLE’s past year of commit activity
    C++ 57 GPL-3.0 10 23 0 Updated Feb 15, 2024
  • METEORE Public

    Automatic DNA methylation detection from nanopore tools and their consensus model

    comprna/METEORE’s past year of commit activity
    R 72 MIT 18 6 1 Updated May 22, 2023
  • ISOTOPE Public

    ISOform-guided prediction of epiTOPEs in cancer

    comprna/ISOTOPE’s past year of commit activity
    Python 14 GPL-3.0 6 3 0 Updated Apr 10, 2023
  • reorientexpress Public

    Transcriptome long-read orientation with Deep Learning

    comprna/reorientexpress’s past year of commit activity
    Python 9 MIT 4 2 1 Updated Mar 25, 2023