Fix modifications on peptides that are too long #160
Workflow file for this run
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| name: Publish to PyPI and GitHub release | |
| on: | |
| push: | |
| tags: | |
| - 'v*' | |
| jobs: | |
| python-package: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.8' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install setuptools wheel flake8 twine | |
| - name: Check for syntax errors | |
| run: | | |
| flake8 ./deeplc --count --select=E9,F63,F7,F82 --show-source --statistics | |
| - name: Build and publish to PyPI | |
| env: | |
| TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }} | |
| TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }} | |
| run: | | |
| python setup.py sdist bdist_wheel | |
| twine upload dist/* | |
| - name: Upload compiled wheels | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: dist | |
| path: dist/*.whl | |
| windows-installer: | |
| runs-on: windows-latest | |
| needs: python-package | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.8' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install . gooey pyinstaller | |
| - name: Install Inno Setup | |
| uses: crazy-max/ghaction-chocolatey@v1 | |
| with: | |
| args: install innosetup -y --allow-unofficial --force | |
| - name: Run pyinstaller | |
| run: pyinstaller ./deeplc_pyinstaller.spec --clean --noconfirm | |
| - name: Test built DeepLC exe | |
| run: dist/deeplc/deeplc.exe --ignore-gooey --help | |
| - name: Run Inno Setup | |
| run: ISCC.exe ./deeplc_innosetup.iss /DMyAppVersion=$(python setup.py --version) | |
| - name: Upload installer | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: dist | |
| path: dist/*.exe | |
| git-release: | |
| runs-on: ubuntu-latest | |
| needs: [python-package, windows-installer] | |
| steps: | |
| - name: Download installer | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: dist | |
| path: dist | |
| - name: Create GitHub Release | |
| uses: docker://antonyurchenko/git-release:v4 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| DRAFT_RELEASE: "false" | |
| PRE_RELEASE: "false" | |
| CHANGELOG_FILE: "CHANGELOG.md" | |
| with: | |
| args: | | |
| dist/* | |
| build-streamlit-image: | |
| runs-on: ubuntu-latest | |
| needs: python-package | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - id: latest_release | |
| uses: pozetroninc/github-action-get-latest-release@master | |
| with: | |
| owner: compomics | |
| repo: DeepLC | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v1 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.repository_owner }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Build and push to ghcr.io | |
| uses: docker/build-push-action@v2 | |
| with: | |
| context: streamlit | |
| push: true | |
| tags: | | |
| ghcr.io/compomics/deeplc-streamlit:${{ steps.latest_release.outputs.release }} | |
| ghcr.io/compomics/deeplc-streamlit:latest |