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acceptance: stabilize start-single-node in tcl test
We've continued to see flakes on this test which contain messages of throttled stores on node startup. The hypothesis is that these are due to leftover data directories from prior startups during the same test. This change clears the `logs/db` data directory for those invocations and also adds the sql memory flag which the common tcl function also uses. Resolves #108405 Epic: None Release note: None
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