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hlc: replace Timestamp.flags bit field with synthetic boolean
This commit replaces Timestamp's (and LegacyTimestamp's) `flags` field with a single boolean field called `synthetic`. This shaves a byte off the encoded message when the field is set and makes synthetic timestamps easier to work with. If we ever decide that we need to go back on this because we need more flags (unlikely), we can without breaking anything. The commit also starts the process of updating tests to handle the fact that `Timestamp.Add` should set the synthetic flag. However, it stops before completing the change because it turned out to be fairly large and not a pre-requisite for non-blocking transactions.
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