Merge pull request #9 from cobioda/bego

v0.1
cobioda · Dec 19, 2024 · 47c1ad5 · 47c1ad5
2 parents e7d0ea7 + 1cb1af4
commit 47c1ad5
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Showing 2 changed files with 7 additions and 9 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -19,18 +19,17 @@ urls.Documentation = "https://scispy.readthedocs.io/"
 urls.Source = "https://github.com/cobioda/scispy"
 urls.Home-page = "https://github.com/cobioda/scispy"
 dependencies = [
-    #"scvi-tools",
-    "pydeseq2",
-    "decoupler",
-    "squidpy",
+    "anndata",
+    "scanpy",
+    "squidpy == 1.6.2",
     "spatialdata",
     "spatialdata-io",
     "spatialdata-plot",
-    #"napari-spatialdata",
+    "scvi-tools",
+    "pydeseq2",
+    "decoupler",
     "statannotations",
-    #"torch==1.13.1",
-    #"adjustText",
-
+    "adjustText",
     # for debug logging (referenced from the issue template)
     "session-info"
 ]

diff --git a/src/scispy/io/basic.py b/src/scispy/io/basic.py
@@ -2,7 +2,6 @@
 import spatialdata as sd
 import spatialdata_io
 
-
 def load_merscope(
     path: str,
     slide_name: str,