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pypi-nibabel: Autospec creation for update from version 5.1.0 to vers…
…ion 5.2.0
Blake Dewey (2):
Fix typing in SpatialImage __init__
Try to fix mypy error based on type change
Christopher J. Markiewicz (116):
DOC: Link to logo with full URL
FIX: Catch random bad slice when testing image slicing
CI: Switch to codecov action
TEST: Remove potentially unstable argsort from parrec tests
FIX: Use stable argsort
TEST: Add test file with bad spacing field
RF: Re-consolidate nifti error message
STY: blue
TEST: Use standard encode/decode
TEST: Switch to single quotes for expected magic errors
CI: Avoid Python 3.11.4 for unpacking sdist
Revert "CI: Avoid Python 3.11.4 for unpacking sdist"
CI: Add 3.12 pre-release tests
TEST: Mark file:/// URL test as xfail
CI: Disable building dependencies from source
FIX: Hack around 3.12rc1 bug (python/cpython#108111)
TEST: Use tmp_path and explicit delete to appease Windows tempdir cleanup
TEST: Use a less finicky method of creating temporary files
ENH: Add pointset data structures [BIAP9]
Update nibabel/pointset.py
MNT: Update pre-commit hooks
RF: Recast Pointset as a dataclass with associated affines
TEST: Test Pointset and GridIndices classes
TEST: Test Grid methods
Apply suggestions from code review
RF: Drop ndim/shape attributes, make explicit comment on __array_priority__
FIX: to_mask() implementation
RF: Drop triangular meshes for now
ENH: Expand CIFTI2 constants to use a synonym recoder
Update nibabel/cifti2/cifti2.py
ENH: Permit XmlSerializable.to_xml() to pass kwargs to ElementTree.tostring()
DOC: Improve documentation of XmlSerializable class, update fallback return type
MNT: Skip coverage of abstract methods
CI: Add 3.12 to the stable test matrix
NEP29+1y: Bump minimum numpy
MNT: Update tox config to what we actually do
STY: Apply style fixes
TOX: Add -pre environments
TOX: Split doc build from doctest
TOX: Add build/publish environments
MNT: Pacify build warnings
MNT: Only error on build-strict
CI: Update to latest checkout
TOX: Encode minimum versions in dependencies, add -min and -full flags
Update minimum pyzstd, add zenodo and pre-release environments
MNT: Convert dev optional dependencies to tox
CI: Convert pre-release CI jobs to tox
CI: Convert stable CI to tox
CI: Exclude 3.12 on x86, skip full dependencies for 3.12 for now
CI: Run miscellaneous checks through tox
MNT: Require wheels for things that cannot be built on CI
CI: Do not fail fast
CI: Just run tox directly for miscellaneous checks
MNT: Push h5py support back a bit
MNT: Drop tools/ci for tox
CI: Install doctestplus correctly
MNT: Use none to explicitly avoid dependencies, add labels
CI: Show tox config for debugging
CI: Hack around h5py weirdness
MNT: Restore doc/test extras
CI: Fix expr syntax
MNT: scipy unavailable for some x86 Pythons
TOX: Update environment list to match CI targets
TOX: h5py is not unique, handle scipy likewise
TOX: Fix h5py range, avoid indexed_gzip on 3.12
CI: Pending wheels are covered by tox.ini
DOC: Improve tox.ini documentation
CI: Timeout tox and dump debug information if we go >20 minutes
TOX: Use h5py wheels for all full/pre-x64 builds
CI: Consolidate stable and pre-release tests
CI: Add verbosity to tox
CI: Remove unnecessary pipx call
TOX: Pillow is hard to build on CI
TOX: Match matplotlib conditions to scipy
CI: Add install to none and full tests
MNT: Ignore coverage/testing summary outputs
DOC: Add docs on using tox and pre-commit
TOX: Add NIPY_EXTRA_TESTS to pass_env
CI: Quote python versions for consistency
TOX: Update install_command overrides with x86/x64/pre-specific overrides
CI: Merge checks into test workflow
CI: Update action version
TOX: Add spellcheck environment
TEST: Unroll hash check, do not run unnecessarily
FIX: Apply codespell suggestions
CI: Add spellcheck job
MNT: Add codespell to pre-commit
DOC: Add docs for using and applying style/linting tools
MNT: Add py312-dev-x64 environment
RF: Remove old as_int() hack
RF: Remove old int_to_float() hack
TEST: Add fixture for relaxing digit limits
MNT: Add doctest and coverage pragma
MNT: Install indexed_gzip on 3.12, add dev to all full,pre groups
MNT: Better sort of minimal dependencies
ENH: Add copy() method to ArrayProxy
ENH: Copy lock if filehandle is shared, add tests
TEST: Check IndexedGzipFile ArrayProxys are copied properly
CI: Add workflow_dispatch trigger to tests
TEST: Chdir during doctest to avoid polluting the working dir
CI: Enable colored output with FORCE_COLOR
CI: Move to trusted publishing for PyPI uploads
TOX: Make blue/isort fail on diff
STY: Apply blue
TOX: Pass color preferences to tools
TOX: Enable pydicom@master for dev test
RF: Replace deprecated pydicom.dicomio.read_file with dcmread
MNT: Deprecate unused pydicom_compat module
FIX: read_file -> dcmread
MNT: Update requirements
MNT: Update and simplify mailmap
MNT: Update Zenodo ordering
DOC: Add new contributors, insert old contributor
MNT: Remove 3.12rc1 workaround for python/cpython#180111
MNT: Update README
DOC: 5.2.0 changelog
Dimitri Papadopoulos Orfanos (9):
DOC: Fix typos found by codespell
DOC: Fix typos found by codespell
MNT: Fix typo found by codespell
MNT: Use raw string to avoid escaping '\'
MNT: Use tuples instead of list where possible
MNT: Use list comprehension instead of calling append()
MNT: `[:]` → `.copy()`
MNT: do not refer to the optional data packages
MNT: remove more stuff about optional data package
Eric Larson (26):
MAINT: Deprecations
FIX: Decode
FIX: str
FIX: Revert
CI: Test NumPy 2.0
FIX: Only need legacy if on 2.0
FIX: Cast
FIX: Consistency
FIX: Newbyteorder
FIX: check
FIX: check
FIX: Python types
FIX: Preserve
FIX: Simplify
FIX: Maybe
FIX: Better
FIX: Revert
FIX: ComplexWarning
FIX: Context
FIX: One more
FIX: Explicit
Apply suggestions from code review
FIX: Style
STY: Flake
FIX: Test val equiv
FIX: Version
Mathieu Scheltienne (28):
replace np.sctypes with np.core.sctypes
rm unused imports
run blue instead of black
add author entries
manually define the mapping between str and scalar types in casting.py
rm unused imports
rm unused variable definition
fix blue
fix missing import
try without using the sized aliases
Revert "try without using the sized aliases"
try with sized aliases again and np.longdouble instead of np.float128
use combination of getattr and hasattr, include float96 and complex192 to the list
rm use of np.maximum_sctype
rm unused import
fix quotes for blue style
fix np.sctypeDict calls
better var name
rm unused imports
fix blue
fix spelling
rm unused imports
try test fix suggested by larsoner
try simpler
fix typo
fix more stuff
more fix
fix more stuff
Matthew Brett (4):
RF: refactor find_private_element
Update nibabel/nicom/utils.py
Update nibabel/nicom/utils.py
Update nibabel/nicom/utils.py
Peter Suter (3):
ENH: only warn about invalid Minc2 spacing declaration
Update nibabel/minc2.py
Update .zenodo.json
Reinder Vos de Wael (9):
Allow relative and home paths
Maintain relative path behavior
Push to trigger CI
Restore forward slash behavior
Ensure posix test strings
Update nibabel/tests/test_filename_parser.py
Assert equal pathlib.Path instead of str
Update nibabel/tests/test_filename_parser.py
Update nibabel/tests/test_filename_parser.py- Loading branch information
